exRNAdisease

Entry Detail

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General Information

Database ID: exR0019626 RNA Name: CELF1 RNA Type: mRNA Chromosome: chr11 Starnd: - Coordinate: Start Site(bp): 47465933 End Site(bp): 47565569 External Links: ENSG00000149187

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABT1 chr6 26596953 26600739 + AC010422.3 chr19 12643831 12648397 - AC105052.3 chr7 102637049 102671641 - AC245033.1 chr15 82536788 82573194 - ACIN1 chr14 23058564 23095614 - ACTG1 chr17 81509971 81523847 - ADAR chr1 154582057 154628013 - ADGRL1 chr19 14147743 14206187 - ADIPOR1 chr1 202940826 202958572 - AHDC1 chr1 27534035 27604431 - AL121753.1 chr20 35267885 35280043 - AL121845.2 chr20 63738270 63740398 + AL121845.3 chr20 63708864 63739103 + AL136295.4 chr14 24180395 24190416 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-6856-3p chr9 130626342 130626363 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC087190.3 chr16 9104848 9113181 + AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA