Entry Detail



General Information

Database ID:exR0019758
RNA Name:CHD4
RNA Type:mRNA
Chromosome:chr12
Starnd:-
Coordinate:
Start Site(bp):6570082End Site(bp):6614524
External Links:ENSG00000111642



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABL1
chr9
130713016
130887675
+
AC004832.3
chr22
30409255
30428990
+
AC005943.1
chr19
1578339
1605445
-
AC006064.6
chr12
6556886
6607367
-
AC008763.3
chr19
7678501
7682854
+
AC015813.2
chr17
57989038
58007246
-
AC027796.3
chr17
3585149
3636249
-
AC119674.2
chr1
56173433
56524495
-
AC131160.1
chr3
183815568
183884889
-
AC245033.1
chr15
82536788
82573194
-
ACADS
chr12
120725774
120740008
+
ACD
chr16
67657512
67660815
-
ACTB
chr7
5527148
5563784
-
ACTG1
chr17
81509971
81523847
-
ACTR2
chr2
65227753
65271253
+
ADAMTS7
chr15
78759206
78811464
-
ADGRV1
chr5
90529344
91164437
+
AHSA1
chr14
77457870
77469472
+
AK3
chr9
4709556
4742043
-
AKT1
chr14
104769349
104795751
-
AL033529.1
chr1
32465057
32600792
+
ALAD
chr9
113386312
113401290
-
ALDOA
chr16
30064164
30070457
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC010327.5
chr19
55216660
55221616
+
AC020663.1
chr16
4730115
4752565
-
AC132217.1
chr11
2129121
2129964
-
AC245033.4
chr15
82533175
82540008
-
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA