Entry Detail



General Information

Database ID:exR0019961
RNA Name:CLIC1
RNA Type:mRNA
Chromosome:chr6
Starnd:-
Coordinate:
Start Site(bp):31730581End Site(bp):31739763
External Links:ENSG00000213719



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC004922.1
chr7
99325879
99394653
+
AC006030.1
chr2
74211604
74363377
-
AC008763.3
chr19
7678501
7682854
+
AC010132.3
chr7
42909273
42932174
-
AC011448.1
chr19
19516227
19536076
+
AC012184.2
chr16
70299194
70372582
+
AC107959.5
chr8
23084403
23115536
+
ACIN1
chr14
23058564
23095614
-
ACTB
chr7
5527148
5563784
-
AD000671.2
chr19
35739252
35745432
-
AGPAT4
chr6
161129967
161274061
-
AHNAK
chr11
62433542
62556235
-
AKT1
chr14
104769349
104795751
-
AL133352.1
chr10
100505628
100529881
-
ALAS1
chr3
52198086
52214327
+
ALDH18A1
chr10
95605941
95656711
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-7703
chr14
24143489
24143511
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC010325.2
chr19
50792685
50793584
-
AC107959.4
chr8
23084355
23103558
+
AC245014.3
chr1
145281116
145281462
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA