exRNAdisease

Entry Detail

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General Information

Database ID: exR0020713 RNA Name: DBN1 RNA Type: mRNA Chromosome: chr5 Starnd: - Coordinate: Start Site(bp): 177456608 End Site(bp): 177474401 External Links: ENSG00000113758

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD8 chr19 17292131 17310236 - ABL2 chr1 179099330 179229684 - AC104452.1 chr3 49416777 49429314 - AC104472.3 chr3 155763043 155854442 - AC138811.2 chr16 18788063 18801519 - ACADM chr1 75724347 75787575 + ACAP3 chr1 1292390 1309609 - ACSL3 chr2 222860942 222944639 + ADAT3 chr19 1905399 1913447 + ADCY8 chr8 130780301 131040909 - ADRM1 chr20 62302093 62308862 + ADSL chr22 40346500 40390463 + AGPAT1 chr6 32168212 32178096 - AKAP8L chr19 15380050 15419141 - AL136295.5 chr14 24147548 24166452 + AL136454.1 chr1 192716132 192716653 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3654 chr7 133034860 133034878 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC108134.2 chr16 3156736 3157483 - AC109460.3 chr16 28974804 28990775 + Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA