exRNAdisease

Entry Detail

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General Information

Database ID: exR0020929 RNA Name: DHCR24 RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 54849627 End Site(bp): 54887195 External Links: ENSG00000116133

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABL1 chr9 130713016 130887675 + AC004832.3 chr22 30409255 30428990 + AC005258.1 chr19 2269525 2341172 + AC008763.3 chr19 7678501 7682854 + AC091167.2 chr15 90249556 90272208 + AC120057.2 chr17 7240427 7244635 - ACADSB chr10 123008979 123058290 + ACIN1 chr14 23058564 23095614 - ACTA1 chr1 229431245 229434098 - ADAR chr1 154582057 154628013 - ADGRA3 chr4 22345071 22516066 - AK2 chr1 33007940 33080996 - AKIRIN1 chr1 38991276 39006059 + AKR1B1 chr7 134442356 134459284 - AL136295.1 chr14 24189157 24213473 - AL713999.1 chr1 155169409 155187272 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-7-5p chr19 4770700 4770723 + hsa-miR-654-5p chr14 101040234 101040255 + hsa-miR-541-3p chr14 101064548 101064569 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006064.5 chr12 6510275 6510522 + AC016876.2 chr17 7581964 7584086 - AC040162.3 chr16 67882461 67886367 + AC244517.11 chr5 141136683 141245380 - AD000090.1 chr19 35557956 35581954 + AL096870.2 chr14 24209646 24215987 - Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA