exRNAdisease

Entry Detail

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General Information

Database ID: exR0022093 RNA Name: FBXL19 RNA Type: mRNA Chromosome: chr16 Starnd: + Coordinate: Start Site(bp): 30923055 End Site(bp): 30948783 External Links: ENSG00000099364

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCA2 chr9 137007234 137028922 - ABL2 chr1 179099330 179229684 - ABRACL chr6 139028745 139043302 + AC018523.2 chr11 14493783 14520344 - AC233992.2 chr8 144353228 144355609 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADAMTS19 chr5 129460281 129738683 + ADRM1 chr20 62302093 62308862 + AFF3 chr2 99545419 100192428 - AGO3 chr1 35930718 36072500 + AGRN chr1 1020120 1056118 + AL031708.1 chr16 1632259 1686715 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-22-3p chr17 1713914 1713935 - hsa-miR-324-3p chr17 7223308 7223330 - hsa-miR-625-5p chr14 65471116 65471136 + hsa-miR-423-5p chr17 30117095 30117117 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC125807.2 chr12 3041437 3044950 + AC135048.1 chr16 30948386 30956511 + AC245014.3 chr1 145281116 145281462 + Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA