Entry Detail



General Information

Database ID:exR0022712
RNA Name:GGA2
RNA Type:mRNA
Chromosome:chr16
Starnd:-
Coordinate:
Start Site(bp):23463542End Site(bp):23521995
External Links:ENSG00000103365



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCC1
chr16
15949577
16143074
+
AC010463.1
chr19
17267418
17282966
+
AC018523.2
chr11
14493783
14520344
-
ACBD5
chr10
27195214
27242130
-
ACSF2
chr17
50426158
50474845
+
ACTB
chr7
5527148
5563784
-
ACTN4
chr19
38647649
38731589
+
ADD3
chr10
109996368
110135565
+
AGAP3
chr7
151085831
151144436
+
AGPAT5
chr8
6708642
6761503
+
AHCYL2
chr7
129225023
129430211
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-483-3p
chr11
2134142
2134162
-
hsa-miR-1224-5p
chr3
184241405
184241423
+
hsa-miR-1270
chr19
20399320
20399342
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC019205.1
chr6
73263212
73301789
+
AC105429.1
chr16
87470370
87474370
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA