Entry Detail



General Information

Database ID:exR0023442
RNA Name:HLA-DQB1
RNA Type:mRNA
Chromosome:chr6
Starnd:-
Coordinate:
Start Site(bp):32659467End Site(bp):32668383
External Links:ENSG00000179344



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC008982.1
chr19
38817471
38840178
-
AC010422.3
chr19
12643831
12648397
-
AC087289.3
chr17
75898645
75930129
-
AC137834.1
chr12
57249609
57296484
-
AC245033.1
chr15
82536788
82573194
-
ACACA
chr17
37084992
37406836
-
ACLY
chr17
41866917
41930542
-
ACO1
chr9
32384603
32454769
+
ACOT7
chr1
6264269
6394391
-
ACTB
chr7
5527148
5563784
-
ACTG1
chr17
81509971
81523847
-
ACTR3
chr2
113890063
113962596
+
ADNP
chr20
50888916
50931437
-
ADORA2A
chr22
24417879
24442357
+
ADPRHL2
chr1
36088892
36093932
+
ADSL
chr22
40346500
40390463
+
AGPAT5
chr8
6708642
6761503
+
AHCY
chr20
34280268
34311802
-
AK2
chr1
33007940
33080996
-
AKAP13
chr15
85380571
85749358
+
AKIRIN1
chr1
38991276
39006059
+
AKR7A2
chr1
19303965
19312146
-
AL022238.4
chr22
40346529
40410054
+
AL669918.1
chr6
32813767
32838822
-
AL928654.3
chr14
105487199
105492267
+
ALDOA
chr16
30064164
30070457
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC008957.1
chr5
36666214
36725195
-
AC016876.2
chr17
7581964
7584086
-
AC109460.3
chr16
28974804
28990775
+
AC245033.4
chr15
82533175
82540008
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA