exRNAdisease

Entry Detail

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General Information

Database ID: exR0023444 RNA Name: HLA-DRA RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 32439878 End Site(bp): 32445046 External Links: ENSG00000204287

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC104452.1 chr3 49416777 49429314 - AL133352.1 chr10 100505628 100529881 - AC010323.1 chr19 8308283 8321379 - AC012254.2 chr18 47108188 47176345 - AL136295.1 chr14 24189157 24213473 - AC126283.2 chr4 109713916 109801999 - AC010132.3 chr7 42909273 42932174 - AFG3L2 chr18 12328944 12377227 - ABHD10 chr3 111979010 111993368 + AK2 chr1 33007940 33080996 - ACSL4 chrX 109624244 109733403 - ADPRHL2 chr1 36088892 36093932 + AC011005.1 chr7 129126518 129130793 + ACTR1B chr2 97655939 97664044 - AC007192.1 chr19 18153158 18178117 + AC010422.6 chr19 12525720 12580975 - ADRM1 chr20 62302093 62308862 + AC011462.1 chr19 41350853 41425001 + ACTR2 chr2 65227753 65271253 + ABCF1 chr6 30571393 30597179 + ABLIM1 chr10 114431113 114768061 - ABCF2 chr7 151207837 151227166 - AC004223.3 chr17 35011349 35121493 - AC010547.4 chr16 71447600 71489311 - ACADVL chr17 7217125 7225266 + ACTA1 chr1 229431245 229434098 - ABHD17B chr9 71862452 71910931 - AKIRIN2 chr6 87674860 87702233 - ACTB chr7 5527148 5563784 - AFDN chr6 167826922 167972023 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-320a-3p chr8 22244975 22244996 - hsa-miR-155-5p chr21 25573983 25574006 + hsa-miR-155-3p chr21 25574022 25574043 + hsa-miR-3652 chr12 103930425 103930442 + hsa-miR-3654 chr7 133034860 133034878 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005899.4 chr17 32328441 32329395 + AC007952.4 chr17 19112000 19112636 - AC009403.1 chr7 155611231 155645205 - AC009403.2 chr7 155474256 155644406 - AC010969.2 chr2 9936360 9939590 + AC022400.3 chr10 73674295 73730466 - AC023509.1 chr12 53441741 53467528 + AC026362.1 chr12 122975320 122982907 + AC099778.1 chr3 47379089 47380999 - AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + AL096870.2 chr14 24209646 24215987 - Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA