Entry Detail



General Information

Database ID:exR0023465
RNA Name:HMGB2
RNA Type:mRNA
Chromosome:chr4
Starnd:-
Coordinate:
Start Site(bp):173331376End Site(bp):173334432
External Links:ENSG00000164104



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCA3
chr16
2275881
2340746
-
ACAD10
chr12
111686056
111757107
+
ACKR3
chr2
236567787
236582354
+
ACTG1
chr17
81509971
81523847
-
ACTR3
chr2
113890063
113962596
+
ADAM23
chr2
206443532
206621127
+
ADPGK
chr15
72751369
72785846
-
ADTRP
chr6
11712054
11807046
-
AGBL5
chr2
27042364
27070622
+
AHR
chr7
16916359
17346152
+
AKAP10
chr17
19904302
19978343
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC006064.5
chr12
6510275
6510522
+
AC012321.1
chr16
69703065
69704652
+
AC018647.2
chr7
35695214
35699413
+
AC024940.6
chr12
31280422
31280895
-
AC097478.1
chr4
89743792
89744305
+
AC097534.1
chr4
173322206
173329694
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA