exRNAdisease

Entry Detail

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General Information

Database ID: exR0023510 RNA Name: HNRNPR RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 23303771 End Site(bp): 23344336 External Links: ENSG00000125944

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCD3 chr1 94418389 94518666 + AC010323.1 chr19 8308283 8321379 - AC010422.3 chr19 12643831 12648397 - AC010463.1 chr19 17267418 17282966 + AC013394.1 chr15 92883413 92949230 + AC015813.2 chr17 57989038 58007246 - AC084337.2 chr11 6481485 6508978 + AC114490.2 chr1 34981533 35031741 - AC120057.2 chr17 7240427 7244635 - AC135050.2 chr16 31083439 31094956 - ACLY chr17 41866917 41930542 - ACVR2B chr3 38453890 38493142 + ADD1 chr4 2843857 2930076 + ADSL chr22 40346500 40390463 + AL022238.4 chr22 40346529 40410054 + AL136454.1 chr1 192716132 192716653 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-92a-3p chrX 134169544 134169565 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC020978.5 chr16 68225969 68229145 - AL008727.1 chr16 898967 905224 - Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA