Entry Detail



General Information

Database ID:exR0023957
RNA Name:IMP3
RNA Type:mRNA
Chromosome:chr15
Starnd:-
Coordinate:
Start Site(bp):75639085End Site(bp):75648706
External Links:ENSG00000177971



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCC10
chr6
43427366
43450427
+
AC005258.1
chr19
2269525
2341172
+
AC008764.1
chr19
16479067
16628204
-
AC118553.2
chr1
99970011
100083321
+
AC139530.2
chr17
81703371
81720539
+
ACADS
chr12
120725774
120740008
+
ACAP3
chr1
1292390
1309609
-
ACIN1
chr14
23058564
23095614
-
ACSL1
chr4
184755595
184826818
-
ACTC1
chr15
34790230
34795549
-
ACTN4
chr19
38647649
38731589
+
AFF1
chr4
86935002
87141054
+
AGPAT3
chr21
43865223
43987592
+
AGRN
chr1
1020120
1056118
+
AIMP2
chr7
6009255
6023834
+
AKT1
chr14
104769349
104795751
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC020928.2
chr19
36773712
36775908
-
AC022098.1
chr19
14137146
14171267
+
AC084082.1
chr8
66112667
66126632
+
AL121992.1
chr1
15586136
15603626
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA