Entry Detail



General Information

Database ID:exR0024033
RNA Name:IPO5
RNA Type:mRNA
Chromosome:chr13
Starnd:+
Coordinate:
Start Site(bp):97953658End Site(bp):98024296
External Links:ENSG00000065150



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AAGAB
chr15
67200667
67255195
-
ABCB7
chrX
75051048
75156732
-
ABCC5
chr3
183919934
184017939
-
AC008982.1
chr19
38817471
38840178
-
AC010132.3
chr7
42909273
42932174
-
AC010422.3
chr19
12643831
12648397
-
AC015813.2
chr17
57989038
58007246
-
AC091167.2
chr15
90249556
90272208
+
AC124312.1
chr15
24955034
25000276
+
ACAD10
chr12
111686056
111757107
+
ACTG1
chr17
81509971
81523847
-
ACTR3B
chr7
152759749
152855378
+
ADCY1
chr7
45574140
45723116
+
ADM
chr11
10305073
10307397
+
ADTRP
chr6
11712054
11807046
-
AGRN
chr1
1020120
1056118
+
AGTRAP
chr1
11736084
11754802
+
AHCY
chr20
34280268
34311802
-
AKAP10
chr17
19904302
19978343
-
AL049629.2
chr11
33698261
33722467
-
ALDOA
chr16
30064164
30070457
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-6850-5p
chr8
144791970
144791991
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC132217.1
chr11
2129121
2129964
-
AC244153.1
chr17
38450394
38452444
-
AL049543.1
chr6
28587378
28591747
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA