Entry Detail



General Information

Database ID:exR0083461
RNA Name:TPI1
RNA Type:mRNA
Chromosome:chr12
Starnd:+
Coordinate:
Start Site(bp):6867119End Site(bp):6870948
External Links:ENSG00000111669



Disease Information

Disease Name:Fragile X Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D005600
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Fragile X Syndromes//Syndrome, Fragile X//Syndromes, Fragile X//Marker X Syndrome//Marker X Syndromes//Syndrome, Marker X//Syndromes, Marker X//Mental Retardation, X-Linked, Associated With Marxq28//X-Linked Mental Retardation and Macroorchidism//X Linked Mental Retardation and Macroorchidism//Fragile X Mental Retardation Syndrome//Martin-Bell Syndrome//Martin Bell Syndrome//Syndrome, Martin-Bell//Fra(X) Syndrome//FRAXE Syndrome//FRAXE Syndromes//Syndrome, FRAXE//Syndromes, FRAXE//Mental Retardation, X-Linked, Associated With Fragile Site Fraxe//Fragile X-F Mental Retardation Syndrome//Mar (X) Syndrome//FRAXA Syndrome//FRAXA Syndromes//Syndrome, FRAXA//Syndromes, FRAXA



Expression Detail

GEO ID:GSE83556
Description:Global transcriptome dysregulation in second trimester fetuses with FMR1 expansions
Experimental Design:Disease vs Control
Case Disease Type:Fragile X Syndrome
Case Disease SubType:NA
Case Sample:Fragile X Syndrome
Control Sample:Normal
Number of Case:22
Number of Control:18
Number of Samples:40





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ADAMTS8
chr11
130404923
130428609
-
ADCY6
chr12
48766194
48789037
-
AC020915.5
chr19
58228914
58315183
+
ABLIM1
chr10
114431113
114768061
-
ACTB
chr7
5527148
5563784
-
ABCF3
chr3
184186023
184194012
+
AC004922.1
chr7
99325879
99394653
+
AGBL5
chr2
27042364
27070622
+
ALDH16A1
chr19
49453225
49471050
+
AC007192.1
chr19
18153158
18178117
+
AHSA1
chr14
77457870
77469472
+
ACTG1
chr17
81509971
81523847
-
ACADS
chr12
120725774
120740008
+
AC022384.1
chr3
10249372
10285796
+
AL355916.3
chr14
61529128
61657964
+
AC011455.2
chr19
38915404
38949855
-
ACIN1
chr14
23058564
23095614
-
AC245033.1
chr15
82536788
82573194
-
AC091167.2
chr15
90249556
90272208
+
ACSS2
chr20
34872146
34927962
+
AL360181.3
chr10
133380017
133420271
+
ACY1
chr3
51983340
51989197
+
AC124312.1
chr15
24955034
25000276
+
ACTR2
chr2
65227753
65271253
+
ACLY
chr17
41866917
41930542
-
ALDH2
chr12
111766887
111817532
+
ABCF1
chr6
30571393
30597179
+
AC093323.1
chr4
6663396
6676755
+
AHCY
chr20
34280268
34311802
-
AKAP1
chr17
57085092
57121346
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC004687.1
chr17
58330884
58332508
-
AC007952.4
chr17
19112000
19112636
-
AC009446.1
chr8
71675300
71702786
+
AC023509.1
chr12
53441741
53467528
+
AC026362.1
chr12
122975320
122982907
+
AC068768.1
chr12
123262060
123262402
+
AC079781.5
chr7
97851688
97972985
-
AC092306.1
chr19
44803701
44804010
+
AC106864.1
chr4
112693047
112706810
-
AC245033.4
chr15
82533175
82540008
-
AD000090.1
chr19
35557956
35581954
+
AL136419.1
chr14
23969931
24051377
+
Display:



Experiment Detail

GEO ID:GSE83556
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:RNA was extracted from 5-15 mL amniotic fluid supernatant (centrifugation at 350g, 4C, 10, min).
RNA Extract protocol:All samples were processed using the Qiagen Circulating Nucleic Acid kit with an on-column DNase digestion step to remove genomic DNA. The RNA was then purified and concentrated with the RNeasy MinElute Clean up kit and eluted in RNasefree water.
RNA library preparation protocol:RNA was converted to cDNA and amplified using the Ovation Pico WTA kit V2 and then purified with the QIAquick PCR Purification kit. Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA)Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA