Entry Detail


General Information

Database ID:exR0085345
RNA Name:hsa-miR-107
RNA Type:miRNA
Chromosome:chr10
Starnd:-
Coordinate:
Start Site(bp):89592756End Site(bp):89592778
External Links:hsa-miR-107



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
STEAP3
chr2
119223831
119265652
+
UBE2J1
chr6
89326625
89352722
-
SIK2
chr11
111602449
111730855
+
ATXN7L3
chr17
44191805
44200113
-
FOSL2
chr2
28392448
28417317
+
KLC1
chr14
103561896
103714249
+
NCAPD2
chr12
6493356
6531955
+
RDH11
chr14
67676800
67695793
-
RNF157
chr17
76142465
76240493
-
SEC61A1
chr3
128051641
128071683
+
RRP1B
chr21
43659560
43696079
+
RTL8B
chrX
135020513
135022542
-
MRPS2
chr9
135499984
135504673
+
SCAMP4
chr19
1905372
1926013
+
AP3M1
chr10
74120255
74151063
-
AC011455.2
chr19
38915404
38949855
-
ZNF697
chr1
119619377
119648266
-
STK40
chr1
36339624
36385896
-
ABHD2
chr15
89087459
89202355
+
SPRYD3
chr12
53064316
53079404
-
BTBD1
chr15
83016423
83067252
-
PLPP6
chr9
4662294
4665258
+
ERG28
chr14
75649791
75660876
-
SRPK1
chr6
35832966
35921342
-
BIRC5
chr17
78214186
78225636
+
RCCD1
chr15
90954870
90963125
+
SFN
chr1
26863149
26864456
+
NAA60
chr16
3443649
3486953
+
ABCF2
chr7
151207837
151227166
-
JPT2
chr16
1678256
1702280
+
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000712
chr16
68208276
68225678
+
hsa_circ_0001723
chr7
91924202
91948826
+
hsa_circ_0001495
chr5
68470703
68471364
+
hsa_circ_0001168
chr20
47691321
47707559
+
hsa_circ_0000652
chr15
90984737
90986710
+
hsa_circ_0001472
chr5
36953719
36976504
+
hsa_circ_0001164
chr20
45891031
45923523
-
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC003092.1
chr7
94022833
94066661
+
AC018521.1
chr17
47945424
47981736
+
AC021078.1
chr5
149494314
149504670
-
AC021092.1
chr19
44103007
44113183
-
AC093297.2
chr5
44826076
44828592
+
AL137127.1
chr1
19072110
19075511
-
FGD5-AS1
chr3
14920347
14948424
-
H19
chr11
1995176
2001470
-
LINC00294
chr11
33076149
33079454
+
LINC00662
chr19
27681072
27794005
-
LINC02035
chr3
122886941
122892416
+
MIR503HG
chrX
134543119
134546642
-
NEAT1
chr11
65422774
65445540
+
NUTM2A-AS1
chr10
87201647
87342612
-
NUTM2B-AS1
chr10
79661394
79826594
-
STAG3L5P-PVRIG2P-PILRB
chr7
100336104
100367831
+
TMEM147-AS1
chr19
35540738
35546029
-
TTC28-AS1
chr22
27919376
28008581
+
TTN-AS1
chr2
178521183
178779963
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA