Entry Detail


General Information

Database ID:exR0085518
RNA Name:hsa-miR-142-3p
RNA Type:miRNA
Chromosome:chr17
Starnd:-
Coordinate:
Start Site(bp):58331245End Site(bp):58331267
External Links:hsa-miR-142-3p



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
BLOC1S6
chr15
45587214
45615945
+
BOD1
chr5
173607145
173616659
-
CUL5
chr11
108008898
108107761
+
ETFRF1
chr12
25195216
25209645
+
SEMA7A
chr15
74409289
74433958
-
TNRC6B
chr22
40044817
40335808
+
ZNF676
chr19
22179089
22215801
-
AL139011.2
chr1
160216800
160285130
-
B2M
chr15
44711487
44718877
+
CCDC126
chr7
23597382
23644708
+
EEF1A1
chr6
73515750
73523797
-
MAST2
chr1
45786987
46036122
+
MBD3
chr19
1573596
1592865
-
MRPL18
chr6
159789812
159798436
+
NDUFA2
chr5
140638740
140647785
-
PEX19
chr1
160276812
160286348
-
PRDX1
chr1
45511036
45523047
-
RPL27
chr17
42998273
43002959
+
SLC35F5
chr2
113705011
113756693
-
SPDL1
chr5
169583636
169604778
+
TMSB4X
chrX
12975110
12977227
+
VPS53
chr17
508668
721717
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000120
chr1
117944807
118009049
+
hsa_circ_0001387
chr4
1902352
1936989
+
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC004687.1
chr17
58330884
58332508
-
AC011815.1
chr18
35280867
35290201
-
AC126365.1
chr17
20788071
20789584
+
FGD5-AS1
chr3
14920347
14948424
-
MALAT1
chr11
65497688
65506516
+
NEAT1
chr11
65422774
65445540
+
AC138761.1
chr17
22266395
22288301
+
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA