Entry Detail


General Information

Database ID:exR0085529
RNA Name:hsa-miR-146a-5p
RNA Type:miRNA
Chromosome:chr5
Starnd:+
Coordinate:
Start Site(bp):160485372End Site(bp):160485393
External Links:hsa-miR-146a-5p



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ALDOA
chr16
30064164
30070457
+
ATP6V0D1
chr16
67438014
67481181
-
FXYD3
chr19
35115879
35124324
+
GATAD1
chr7
92447482
92460075
+
HYOU1
chr11
119044188
119057227
-
JPT2
chr16
1678256
1702280
+
NFIX
chr19
12995608
13098796
+
RNF169
chr11
74748849
74842413
+
SKA2
chr17
59109857
59155260
-
SS18
chr18
26016253
26091217
-
TACC1
chr8
38728186
38853028
+
WDR45B
chr17
82614562
82648553
-
ZNF512B
chr20
63956704
63969930
-
ZNRF3
chr22
28883572
29057488
+
APEH
chr3
49674014
49683971
+
DCAF1
chr3
51395867
51500002
-
GNAS
chr20
58839718
58911192
+
HSP90AA1
chr14
102080738
102139699
-
KDM1A
chr1
23019443
23083689
+
MARCKS
chr6
113857345
113863475
+
NDUFS2
chr1
161197104
161214395
+
RBBP7
chrX
16839283
16870414
-
RPL9
chr4
39452521
39458949
-
SAP18
chr13
21140514
21149084
+
SLC25A5
chrX
119468422
119471396
+
SPAG5
chr17
28577565
28599025
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000418
chr12
69983264
69985939
+
hsa_circ_0001361
chr3
171830241
171851336
+
hsa_circ_0000943
chr19
47421744
47440665
+
hsa_circ_0000799
chr17
65941524
65972074
+
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
KCNQ1OT1
chr11
2608328
2699994
-
MALAT1
chr11
65497688
65506516
+
NEAT1
chr11
65422774
65445540
+
SNHG16
chr17
76557764
76565348
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA