Entry Detail


General Information

Database ID:exR0085590
RNA Name:hsa-miR-18a-5p
RNA Type:miRNA
Chromosome:chr13
Starnd:+
Coordinate:
Start Site(bp):91350756End Site(bp):91350778
External Links:hsa-miR-18a-5p



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
PATZ1
chr22
31325804
31346346
-
TUBA4A
chr2
219249710
219278170
-
SURF4
chr9
133361450
133376166
-
DDX5
chr17
64498254
64508199
-
SND1
chr7
127652194
128092609
+
HIF1AN
chr10
100529072
100559998
+
SIK2
chr11
111602449
111730855
+
FKBP1A
chr20
1368978
1393172
-
USP10
chr16
84699978
84779922
+
PARL
chr3
183829271
183884933
-
ASF1B
chr19
14119512
14136613
-
PRPF38B
chr1
108692310
108702928
+
ADAT2
chr6
143422832
143450695
-
ZNF12
chr7
6688433
6706947
-
DNAJC9
chr10
73183362
73247255
-
AC131160.1
chr3
183815568
183884889
-
ACSS2
chr20
34872146
34927962
+
MRPS18A
chr6
43671303
43687791
-
XRCC6
chr22
41621119
41664048
+
ROMO1
chr20
35699272
35700984
+
PEX5
chr12
7188685
7218574
+
NDUFV2
chr18
9102630
9134345
+
UBE2Z
chr17
48908407
48929056
+
NOP58
chr2
202265736
202303661
+
RNF4
chr4
2462220
2625320
+
CHD1
chr5
98853985
98928957
-
ATP2B1
chr12
89588049
89709300
-
SLC41A1
chr1
205789094
205813748
-
NCDN
chr1
35557473
35567274
+
HMGCS1
chr5
43287470
43313512
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000712
chr16
68208276
68225678
+
hsa_circ_0001186
chr21
35475133
35475818
+
hsa_circ_0001247
chr22
46125304
46136418
+
hsa_circ_0000921
chr19
30476129
30477324
+
hsa_circ_0000943
chr19
47421744
47440665
+
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC073896.4
chr12
56162359
56190284
-
AC093010.3
chr3
114314501
114329714
-
AC145207.5
chr17
81878425
81881106
-
AL162171.3
chr14
88589231
88592408
+
AP005263.1
chr18
9102736
9254346
+
CASC2
chr10
118046279
118210158
+
GAS5
chr1
173858559
173868882
-
NEAT1
chr11
65422774
65445540
+
SNHG1
chr11
62851984
62855953
-
SNHG15
chr7
44983023
44986961
-
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA