Entry Detail


General Information

Database ID:exR0085618
RNA Name:hsa-miR-195-5p
RNA Type:miRNA
Chromosome:chr17
Starnd:-
Coordinate:
Start Site(bp):7017667End Site(bp):7017687
External Links:hsa-miR-195-5p



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABHD2
chr15
89087459
89202355
+
AMER1
chrX
64185117
64205708
-
ANKRD17
chr4
73073376
73258798
-
ARHGAP35
chr19
46860997
47005077
+
ASB1
chr2
238426742
238452250
+
BACE1
chr11
117285207
117316259
-
BIRC5
chr17
78214186
78225636
+
CA12
chr15
63321378
63381846
-
CYB561A3
chr11
61348745
61362299
-
DCAF7
chr17
63550477
63594279
+
ERG28
chr14
75649791
75660876
-
FGFR1
chr8
38400215
38468834
-
FLOT2
chr17
28879335
28897733
-
FSD1
chr19
4304598
4323843
+
KDSR
chr18
63327726
63367228
-
MAPK1IP1L
chr14
55051647
55070194
+
MRPS2
chr9
135499984
135504673
+
MYB
chr6
135181308
135219173
+
PARM1
chr4
74933095
75050115
+
PDE4A
chr19
10416773
10469630
+
PLPP6
chr9
4662294
4665258
+
SCAMP4
chr19
1905372
1926013
+
STEAP3
chr2
119223831
119265652
+
TOB2
chr22
41433494
41446801
-
TSPYL2
chrX
53082367
53088540
+
ZBTB34
chr9
126860665
126885878
+
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000540
chr14
55799534
55821940
+
hsa_circ_0001005
chr2
53921020
53978078
-
hsa_circ_0001723
chr7
91924202
91948826
+
hsa_circ_0000458
chr12
124071293
124074996
+
hsa_circ_0001699
chr7
40027197
40041630
+
hsa_circ_0001387
chr4
1902352
1936989
+
hsa_circ_0001168
chr20
47691321
47707559
+
hsa_circ_0000552
chr14
71880664
71948928
+
hsa_circ_0000038
chr1
28800065
28802803
+
hsa_circ_0000652
chr15
90984737
90986710
+
hsa_circ_0001472
chr5
36953719
36976504
+
hsa_circ_0001263
chr3
5215701
5216099
+
hsa_circ_0000799
chr17
65941524
65972074
+
hsa_circ_0001164
chr20
45891031
45923523
-
hsa_circ_0000032
chr1
25666964
25669564
+
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
MIR29B2CHG
chr1
207801518
207879115
-
LINC00662
chr19
27681072
27794005
-
AC002470.2
chr22
20979462
20998121
+
NUTM2A-AS1
chr10
87201647
87342612
-
SNHG1
chr11
62851984
62855953
-
AC114980.1
chr5
93860669
93863825
-
LINC01184
chr5
127939152
128083172
-
SNHG25
chr17
64145970
64146476
+
NEAT1
chr11
65422774
65445540
+
AC021092.1
chr19
44103007
44113183
-
AL391244.1
chr1
1420245
1422691
+
SNHG12
chr1
28578538
28583132
-
LINC02035
chr3
122886941
122892416
+
AP000317.2
chr21
34073592
34360033
+
NUTM2B-AS1
chr10
79661394
79826594
-
MZF1-AS1
chr19
58559129
58574797
+
MCM3AP-AS1
chr21
46229196
46259390
+
XIST
chrX
73820649
73852723
-
AL359924.1
chr1
237862175
237928321
+
AC020978.7
chr16
68224713
68227734
+
AC021078.1
chr5
149494314
149504670
-
AC003092.1
chr7
94022833
94066661
+
SNHG16
chr17
76557764
76565348
+
FGD5-AS1
chr3
14920347
14948424
-
HCG18
chr6
30286690
30327382
-
MIR503HG
chrX
134543119
134546642
-
LINC00649
chr21
33915534
33977691
+
AC079781.5
chr7
97851688
97972985
-
STAG3L5P-PVRIG2P-PILRB
chr7
100336104
100367831
+
AL031282.2
chr1
1702736
1737688
-
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA