Entry Detail


General Information

Database ID:exR0085630
RNA Name:hsa-miR-199b-5p
RNA Type:miRNA
Chromosome:chr9
Starnd:-
Coordinate:
Start Site(bp):128244783End Site(bp):128244805
External Links:hsa-miR-199b-5p



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ALDH3B2
chr11
67662160
67681224
-
ATP9A
chr20
51596514
51768390
-
CHD2
chr15
92900189
93027996
+
COL4A2
chr13
110305812
110513209
+
COX6A1
chr12
120438090
120440737
+
FAM222B
chr17
28755978
28855232
-
FOSL2
chr2
28392448
28417317
+
HMGCS1
chr5
43287470
43313512
-
KRT80
chr12
52168996
52192014
-
MYRF
chr11
61752642
61788518
+
NFE2L1
chr17
48048329
48061545
+
SLC7A5
chr16
87830023
87869507
-
WNT5A
chr3
55465715
55490539
-
XPO6
chr16
28097979
28211920
-
ZMIZ1
chr10
79068966
79316528
+
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000591
chr15
41961025
41962156
+
hsa_circ_0001005
chr2
53921020
53978078
-
hsa_circ_0000892
chr19
11941431
12014514
+
hsa_circ_0000931
chr19
38226804
38231095
-
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC004951.4
chr7
43951910
44019151
-
AC095055.1
chr4
151139991
151141103
+
BX284668.2
chr1
16870945
16883659
+
LINC01783
chr1
16533886
16536172
-
POLR2J4
chr7
43940895
44019175
-
SNHG12
chr1
28578538
28583132
-
TMPO-AS1
chr12
98512973
98516422
-
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA