Entry Detail


General Information

Database ID:exR0085631
RNA Name:hsa-miR-19a-3p
RNA Type:miRNA
Chromosome:chr13
Starnd:+
Coordinate:
Start Site(bp):91350939End Site(bp):91350961
External Links:hsa-miR-19a-3p



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ATP6V1B2
chr8
20197381
20226819
+
BCL7A
chr12
122019422
122062044
+
BRWD1
chr21
39184176
39321559
-
BTBD7
chr14
93237550
93333092
-
CAMTA1
chr1
6785454
7769706
+
CASP2
chr7
143288215
143307696
+
CCDC47
chr17
63745255
63776351
-
DNAJC16
chr1
15526813
15592379
+
HIP1
chr7
75533298
75738962
-
HOMER1
chr5
79372636
79514134
-
MEF2D
chr1
156463727
156500779
-
MYLIP
chr6
16129086
16148248
+
RCOR1
chr14
102592649
102730561
+
RFX1
chr19
13961530
14007039
-
RPS23
chr5
82273320
82278396
-
TMEM181
chr6
158536436
158635428
+
ATF7IP
chr12
14365632
14502935
+
CAMSAP1
chr9
135808487
135907546
-
CDS1
chr4
84583127
84651334
+
CHIC1
chrX
73563200
73687102
+
DTL
chr1
212035553
212107400
+
MARCKS
chr6
113857345
113863475
+
SCYL2
chr12
100267140
100341715
+
SPAG7
chr17
4959226
4967817
-
SPOPL
chr2
138501770
138573547
+
STK33
chr11
8391868
8594289
-
TNFRSF12A
chr16
3018445
3022383
+
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0001454
chr4
154524454
154533552
+
hsa_circ_0001186
chr21
35475133
35475818
+
hsa_circ_0000384
chr12
27867712
27877119
+
hsa_circ_0001605
chr6
42903447
42905047
+
hsa_circ_0000155
chr1
168007608
168014465
+
hsa_circ_0001495
chr5
68470703
68471364
+
hsa_circ_0000943
chr19
47421744
47440665
+
hsa_circ_0001164
chr20
45891031
45923523
-
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005394.2
chr19
28435388
28727680
-
AC010997.3
chr10
75279726
75401246
-
AC011498.2
chr19
4447304
4448217
+
AC011503.2
chr19
23927788
23929287
+
AC021078.1
chr5
149494314
149504670
-
AC135050.6
chr16
31122235
31124064
+
AL049840.4
chr14
103694516
103695050
-
AL158206.1
chr9
19453209
19455173
+
AL158825.2
chr9
75009828
75016036
-
H19
chr11
1995176
2001470
-
HAGLR
chr2
176164051
176188958
-
LAMTOR5-AS1
chr1
110347116
110443817
+
LINC00667
chr18
5237826
5290608
+
MCM3AP-AS1
chr21
46229196
46259390
+
NEAT1
chr11
65422774
65445540
+
SNHG20
chr17
77086716
77099902
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA