Entry Detail


General Information

Database ID:exR0085635
RNA Name:hsa-miR-19b-3p
RNA Type:miRNA
Chromosome:chr13
Starnd:+
Coordinate:
Start Site(bp):91351245End Site(bp):91351267
External Links:hsa-miR-19b-3p



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
BCL7A
chr12
122019422
122062044
+
UBA1
chrX
47190861
47215128
+
RPS23
chr5
82273320
82278396
-
ALDH3A2
chr17
19648136
19685760
+
MEF2D
chr1
156463727
156500779
-
TBC1D25
chrX
48539714
48562609
+
ANAPC16
chr10
72216000
72235860
+
PYGB
chr20
25248085
25298012
+
CASP2
chr7
143288215
143307696
+
TUB
chr11
8019244
8106112
+
SRSF6
chr20
43457893
43466046
+
CAMTA1
chr1
6785454
7769706
+
PMPCB
chr7
103297435
103329511
+
RFX1
chr19
13961530
14007039
-
BTBD7
chr14
93237550
93333092
-
ZNF397
chr18
35241030
35267133
+
F13A1
chr6
6144084
6321013
-
DNAJC16
chr1
15526813
15592379
+
HOMER1
chr5
79372636
79514134
-
REV1
chr2
99400475
99490035
-
RAB18
chr10
27504174
27542237
+
TBL1X
chrX
9463295
9741037
+
MTREX
chr5
55307989
55425579
+
PTPN21
chr14
88465778
88555007
-
EIF4A2
chr3
186783205
186789897
+
PATL1
chr11
59636716
59669037
-
ST3GAL5
chr2
85837120
85905199
-
USP14
chr18
158383
214629
+
CLDN6
chr16
3014712
3020071
-
COPB1
chr11
14443440
14500027
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0001454
chr4
154524454
154533552
+
hsa_circ_0001186
chr21
35475133
35475818
+
hsa_circ_0000384
chr12
27867712
27877119
+
hsa_circ_0001605
chr6
42903447
42905047
+
hsa_circ_0000155
chr1
168007608
168014465
+
hsa_circ_0001495
chr5
68470703
68471364
+
hsa_circ_0000943
chr19
47421744
47440665
+
hsa_circ_0001164
chr20
45891031
45923523
-
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005394.2
chr19
28435388
28727680
-
AC010997.3
chr10
75279726
75401246
-
AC011498.2
chr19
4447304
4448217
+
AC011503.2
chr19
23927788
23929287
+
AC021078.1
chr5
149494314
149504670
-
AC135050.6
chr16
31122235
31124064
+
AL049840.4
chr14
103694516
103695050
-
AL158206.1
chr9
19453209
19455173
+
AL158825.2
chr9
75009828
75016036
-
H19
chr11
1995176
2001470
-
HAGLR
chr2
176164051
176188958
-
LAMTOR5-AS1
chr1
110347116
110443817
+
LINC00667
chr18
5237826
5290608
+
MCM3AP-AS1
chr21
46229196
46259390
+
NEAT1
chr11
65422774
65445540
+
SNHG20
chr17
77086716
77099902
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA