Entry Detail


General Information

Database ID:exR0085682
RNA Name:hsa-miR-217-5p
RNA Type:miRNA
Chromosome:chr2
Starnd:-
Coordinate:
Start Site(bp):55983020End Site(bp):55983042
External Links:hsa-miR-217-5p



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
PNPO
chr17
47941506
47949308
+
SLC26A2
chr5
149960758
149993455
+
ICAM1
chr19
10271093
10286615
+
ARHGAP11A
chr15
32615144
32639941
+
SFXN1
chr5
175477062
175529742
+
EIF1AD
chr11
65996545
66002176
-
KPNA4
chr3
160495007
160565571
-
LYSMD4
chr15
99715697
99733561
-
AXL
chr19
41219223
41261766
+
OPA3
chr19
45527427
45602212
-
IRF4
chr6
391752
411443
+
SLC25A32
chr8
103398635
103415189
-
UBE2G1
chr17
4269259
4366628
-
MMD
chr17
55392622
55421924
-
CDH1
chr16
68737292
68835541
+
ICK
chr6
53001279
53061802
-
PARD6B
chr20
50731580
50756795
+
GOLGA3
chr12
132768914
132829078
-
MET
chr7
116672196
116798386
+
ACER2
chr9
19409009
19452505
+
PSKH1
chr16
67893254
67929676
+
EIF2S3
chrX
24054946
24078810
+
VHL
chr3
10141008
10152220
+
DDX3X
chrX
41333284
41364472
+
ZNF587
chr19
57849859
57865117
+
TSEN54
chr17
75516060
75524735
+
CNN2
chr19
1026586
1039068
+
CHD9
chr16
53055033
53329150
+
ERLIN1
chr10
100150094
100186033
-
TFPI
chr2
187464230
187565760
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
ADAMTSL4-AS1
chr1
150560202
150574552
-
AP000553.1
chr22
21652270
21670237
+
GAS5
chr1
173858559
173868882
-
LINC01578
chr15
92819540
92899701
+
MALAT1
chr11
65497688
65506516
+
NEAT1
chr11
65422774
65445540
+
OIP5-AS1
chr15
41283990
41309737
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA