Entry Detail


General Information

Database ID:exR0085737
RNA Name:hsa-miR-296-3p
RNA Type:miRNA
Chromosome:chr20
Starnd:-
Coordinate:
Start Site(bp):58817626End Site(bp):58817647
External Links:hsa-miR-296-3p



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ATXN7
chr3
63864557
64003462
+
BAZ2A
chr12
56595596
56636816
-
COL6A1
chr21
45981769
46005050
+
CYLD
chr16
50742050
50801935
+
FAM210A
chr18
13663347
13726663
-
HMGCS1
chr5
43287470
43313512
-
HOXC10
chr12
53985065
53990279
+
HP1BP3
chr1
20740266
20787323
-
KAT6A
chr8
41929479
42051994
-
KMT2D
chr12
49018975
49059774
-
KPNA6
chr1
32108056
32176563
+
LASP1
chr17
38869859
38921770
+
MINK1
chr17
4833340
4898061
+
NFAT5
chr16
69565094
69704666
+
PFN2
chr3
149964904
150050788
-
RTKN
chr2
74425835
74442422
-
SERF2
chr15
43777087
43802589
+
SLC2A4RG
chr20
63739776
63744050
+
STK35
chr20
2101827
2177038
+
TMEM97
chr17
28319200
28328685
+
TP53
chr17
7661779
7687550
-
TULP3
chr12
2877223
2941138
+
UBA2
chr19
34428352
34471251
+
VANGL1
chr1
115641970
115698224
+
ZFP91
chr11
58579063
58621550
+
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0001867
chr9
86294689
86297981
-
hsa_circ_0001866
chr9
86293355
86297981
-
hsa_circ_0001046
chr2
97024782
97033111
+
hsa_circ_0001146
chr20
34241449
34246936
-
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC009133.5
chr16
29808679
29812227
+
AC016831.1
chr7
130876809
130913310
-
AC023509.1
chr12
53441741
53467528
+
NEAT1
chr11
65422774
65445540
+
NORAD
chr20
36045618
36051018
-
PCBP2-OT1
chr12
53464468
53465057
+
SNHG25
chr17
64145970
64146476
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA