Entry Detail


General Information

Database ID:exR0086520
RNA Name:hsa-miR-4709-3p
RNA Type:miRNA
Chromosome:chr14
Starnd:-
Coordinate:
Start Site(bp):74480135End Site(bp):74480157
External Links:hsa-miR-4709-3p



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
BCORL1
chrX
129981107
130058083
+
COQ8A
chr1
226897536
226987545
+
DNAJB6
chr7
157335381
157417439
+
LAMC1
chr1
183023420
183145592
+
PURA
chr5
140107777
140125619
+
TMEM167A
chr5
83052846
83077863
-
BIK
chr22
43110750
43129712
+
CLSTN3
chr12
7129698
7158945
+
DHX16
chr6
30653119
30673006
-
EMC4
chr15
34225013
34230156
+
ETV3
chr1
157121191
157138474
-
GATM
chr15
45361124
45402327
-
MED1
chr17
39404285
39451272
-
MED28
chr4
17614641
17634105
+
MSH3
chr5
80654652
80876815
+
MTRNR2L12
chr3
96617188
96618236
-
NDUFA4
chr7
10931943
10940153
-
NPC2
chr14
74476192
74494177
-
PLBD1
chr12
14503661
14567883
-
PLEKHA5
chr12
19129752
19376400
+
RACK1
chr5
181236897
181248096
-
RBM15B
chr3
51391285
51397908
+
SLC50A1
chr1
155135344
155138857
+
TPRG1L
chr1
3625015
3630127
+
WNK1
chr12
752579
911452
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA