Entry Detail


General Information

Database ID:exR0086521
RNA Name:hsa-miR-4709-5p
RNA Type:miRNA
Chromosome:chr14
Starnd:-
Coordinate:
Start Site(bp):74480175End Site(bp):74480196
External Links:hsa-miR-4709-5p



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
BCORL1
chrX
129981107
130058083
+
CBX2
chr17
79778148
79787983
+
CTNND1
chr11
57753243
57819546
+
DNAJB6
chr7
157335381
157417439
+
ERP29
chr12
112013348
112023449
+
LAMC1
chr1
183023420
183145592
+
ARID4B
chr1
235131634
235328219
-
CLSTN3
chr12
7129698
7158945
+
DHX16
chr6
30653119
30673006
-
GFM2
chr5
74721206
74767147
-
HNRNPL
chr19
38836388
38852347
-
HOXB13
chr17
48724763
48729178
-
HSP90AA1
chr14
102080738
102139699
-
IDH1
chr2
208236227
208266074
-
IREB2
chr15
78437431
78501453
+
MKKS
chr20
10401009
10434222
-
MSH3
chr5
80654652
80876815
+
NPC2
chr14
74476192
74494177
-
PABPC1
chr8
100685816
100722809
-
PODXL
chr7
131500262
131558217
-
PRDX5
chr11
64318121
64321811
+
SCAF8
chr6
154733325
154834244
+
TIAM2
chr6
154832697
155257723
+
UGP2
chr2
63840940
63891562
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005479.1
chr14
74474007
74474864
-
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA