Entry Detail


General Information

Database ID:exR0086694
RNA Name:hsa-miR-493-3p
RNA Type:miRNA
Chromosome:chr14
Starnd:+
Coordinate:
Start Site(bp):100869116End Site(bp):100869137
External Links:hsa-miR-493-3p



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ANKS1A
chr6
34889255
35091406
+
ASF1B
chr19
14119512
14136613
-
BACH2
chr6
89926528
90296908
-
BRPF3
chr6
36196744
36232790
+
C17orf49
chr17
7014495
7017525
+
DYNLRB1
chr20
34516409
34540958
+
EPG5
chr18
45847609
45967329
-
HIF1AN
chr10
100529072
100559998
+
MEX3A
chr1
156072013
156082465
-
MFN2
chr1
11980181
12013514
+
MMGT1
chrX
135962070
135974063
-
MTUS1
chr8
17643795
17800917
-
NPTX1
chr17
80466834
80477843
-
PRKAR2A
chr3
48744597
48847874
-
PXN
chr12
120210439
120265771
-
RNASEK-C17orf49
chr17
7012635
7017520
+
XPO6
chr16
28097979
28211920
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0001146
chr20
34241449
34246936
-
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC016831.1
chr7
130876809
130913310
-
AC016876.2
chr17
7581964
7584086
-
AC022167.2
chr16
8848105
8860456
+
AC144548.1
chr12
110387463
110445548
-
AL359924.1
chr1
237862175
237928321
+
MIR200CHG
chr12
6963246
6964447
+
TUG1
chr22
30969245
30979395
+
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA