Entry Detail


General Information

Database ID:exR0086835
RNA Name:hsa-miR-541-3p
RNA Type:miRNA
Chromosome:chr14
Starnd:+
Coordinate:
Start Site(bp):101064548End Site(bp):101064569
External Links:hsa-miR-541-3p



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
REPIN1
chr7
150368189
150374044
+
HOXD11
chr2
176104216
176109754
+
LY6E
chr8
143017982
143023832
+
FASN
chr17
82078338
82098294
-
M6PR
chr12
8940361
8949761
-
TOM1L2
chr17
17843511
17972422
-
ACACA
chr17
37084992
37406836
-
TAF4
chr20
61953469
62065810
-
MID1IP1
chrX
38801432
38806537
+
FBXO46
chr19
45710629
45730896
-
BICRA
chr19
47608196
47703277
+
CALR
chr19
12938578
12944489
+
ARHGDIA
chr17
81867721
81871378
-
UCP2
chr11
73974672
73983246
-
FKBP1A
chr20
1368978
1393172
-
SLC6A6
chr3
14402576
14489349
+
NFIX
chr19
12995608
13098796
+
ADGRL1
chr19
14147743
14206187
-
NID1
chr1
235975830
236065109
-
CAPZB
chr1
19338775
19485539
-
AGRN
chr1
1020120
1056118
+
AXL
chr19
41219223
41261766
+
MAFG
chr17
81918270
81927735
-
PKM
chr15
72199029
72231822
-
IGFBP5
chr2
216672105
216695549
-
MIGA2
chr9
129036621
129072082
+
ZMIZ1
chr10
79068966
79316528
+
PRRC2B
chr9
131373636
131500197
+
ACVR1B
chr12
51951699
51997078
+
DMWD
chr19
45782947
45792845
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000417
chr12
69644908
69656342
+
hsa_circ_0000642
chr15
80390757
80415142
+
hsa_circ_0000816
chr17
80521229
80526077
+
hsa_circ_0000643
chr15
80412669
80415142
+
hsa_circ_0000943
chr19
47421744
47440665
+
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC239868.1
chr1
149861271
149862504
+
AL035458.2
chr20
34234840
34281173
-
AL356488.2
chr1
109100193
109100619
+
NEAT1
chr11
65422774
65445540
+
NORAD
chr20
36045618
36051018
-
OIP5-AS1
chr15
41283990
41309737
+
STAG3L5P-PVRIG2P-PILRB
chr7
100336104
100367831
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA