Entry Detail


General Information

Database ID:exR0087126
RNA Name:hsa-miR-650
RNA Type:miRNA
Chromosome:chr22
Starnd:+
Coordinate:
Start Site(bp):22822791End Site(bp):22822811
External Links:hsa-miR-650



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE126399
Description:Ascites-derived circulating microRNAs as potential diagnostic biomarkers of gastric cancer-associated malignant ascites
Experimental Design:Disease vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Liver Cirrhosis
Number of Case:12
Number of Control:10
Number of Samples:22





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
POM121C
chr7
75416786
75486299
-
ATXN2L
chr16
28823035
28837237
+
RNF220
chr1
44405194
44651724
+
POLE3
chr9
113407235
113410675
-
SFN
chr1
26863149
26864456
+
SH3GL1
chr19
4360370
4400547
-
STOM
chr9
121338987
121370304
-
HNRNPUL1
chr19
41262496
41307787
+
LMNA
chr1
156082573
156140089
+
SLC9A3R1
chr17
74748628
74769353
+
HPCAL1
chr2
10302889
10427617
+
TRAF7
chr16
2155698
2178129
+
GBF1
chr10
102245532
102382899
+
ZNF623
chr8
143636013
143656418
+
USP22
chr17
20999596
21043760
-
POLDIP3
chr22
42583721
42614962
-
VHL
chr3
10141008
10152220
+
ABL1
chr9
130713016
130887675
+
TSKU
chr11
76782251
76798153
+
TRAPPC10
chr21
44012309
44106552
+
SLC29A1
chr6
44219553
44234142
+
HIF1AN
chr10
100529072
100559998
+
NBL1
chr1
19596979
19658456
+
AFAP1
chr4
7758714
7939926
-
CBFA2T3
chr16
88874858
88977207
-
AKT2
chr19
40230317
40285536
-
RAB1B
chr11
66268590
66277492
+
PAK4
chr19
39125770
39182816
+
DUSP8
chr11
1554051
1572271
-
TESMIN
chr11
68707440
68751520
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0001168
chr20
47691321
47707559
+
hsa_circ_0001146
chr20
34241449
34246936
-
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC068768.1
chr12
123262060
123262402
+
AC118758.3
chr7
56809214
56848800
-
AL049796.1
chr1
93847174
93848939
+
AL355075.4
chr14
20343048
20343685
-
DSCAM-AS1
chr21
40383083
40385358
+
KCNQ1OT1
chr11
2608328
2699994
-
LINC01772
chr1
16460948
16468481
+
MIR155HG
chr21
25561909
25575168
+
MIR663AHG
chr20
26167817
26251546
-
NEAT1
chr11
65422774
65445540
+
TUG1
chr22
30969245
30979395
+
Display:



Experiment Detail

GEO ID:GSE126399
Sample Source:Ascite
Source Fraction:Exosome
Platform:GPL18402
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1972
Sample treatment protocol:Exosome from biofluid was precipitated using miRCURY Exosome Isolation Kit (Exiqon).
RNA Extract protocol:Exosomal RNA was isolated using Trizol LS Reagent (Molecular Research Center, Cincinnati, OH, USA).
RNA library preparation protocol:Cyanine 3-labeled cRNA (complementary RNA) was generated from Agilent's Low RNA Input Linear Amplification kit with 500ng total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA