exRNAdisease

Entry Detail

---



General Information

Database ID: exR0196189 RNA Name: hsa-miR-106a-5p RNA Type: miRNA Chromosome: chrX Starnd: - Coordinate: Start Site(bp): 134170244 End Site(bp): 134170266 External Links: hsa-miR-106a-5p

Disease Information

Disease Name: Disease Category: MeSH ID: Type: Alias:

Expression Detail

GEO ID: GSE120584 Description: Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data Experimental Design: Disease vs Control Case Disease Type: Alzheimer's Disease Case Disease SubType: NA Case Sample: Alzheimer's Disease Control Sample: Normal Number of Case: 1021 Number of Control: 288 Number of Samples: 1309

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AP1S1 chr7 101154456 101161596 + LDLRAD3 chr11 35943981 36232136 + PLEKHM1 chr17 45435900 45490749 - MBP chr18 76978827 77133683 - WDR37 chr10 1049538 1132384 + CLOCK chr4 55427903 55546909 - FAM72D chr1 145095974 145112696 + STRN3 chr14 30893799 31026401 - PBXIP1 chr1 154944076 154956123 - MTHFR chr1 11785723 11806455 - ADARB1 chr21 45073853 45226560 + NAA16 chr13 41311267 41377030 + NSD2 chr4 1871393 1982207 + CYLD chr16 50742050 50801935 + LONP2 chr16 48244300 48363122 + ZNF566 chr19 36445119 36489902 - SCAMP2 chr15 74843730 74873365 - BTN3A1 chr6 26402237 26415208 + CCDC6 chr10 59788747 59906556 - C9orf40 chr9 74946583 74952912 - ZDHHC12 chr9 128720870 128724127 - PTP4A1 chr6 63521746 63583436 + CDK6 chr7 92604921 92836594 - FCF1 chr14 74713144 74738620 + ARMC8 chr3 138187248 138298384 + SEC16A chr9 136440096 136483759 - CAPRIN1 chr11 34051731 34102610 + PDRG1 chr20 31944337 31952046 - MSTO1 chr1 155610188 155614971 + WASF3 chr13 26557683 26688948 + miRNA targets: NA circRNA targets: circRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa_circ_0001495 chr5 68470703 68471364 + hsa_circ_0000494 chr13 76134888 76143643 + hsa_circ_0000018 chr1 15860731 15863309 + lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC015871.3 chr15 79920195 79922455 - AC021078.1 chr5 149494314 149504670 - AC021092.1 chr19 44103007 44113183 - AC024940.6 chr12 31280422 31280895 - AC084082.1 chr8 66112667 66126632 + AC087477.2 chr15 96354237 96405235 + AC243964.3 chr19 44631573 44725217 - AL031428.1 chr1 23020147 23088058 - AL137782.1 chr13 75549773 75807120 + AL158206.1 chr9 19453209 19455173 + AL161772.1 chr13 20699307 20703718 - ARHGAP27P1-BPTFP1-KPNA2P3 chr17 64749663 64781707 - CKMT2-AS1 chr5 81201341 81301565 - EPB41L4A-AS1 chr5 112160526 112164818 + ERICD chr8 140636281 140638283 + FGD5-AS1 chr3 14920347 14948424 - H19 chr11 1995176 2001470 - HAGLR chr2 176164051 176188958 - HOTAIR chr12 53962308 53974956 - MALAT1 chr11 65497688 65506516 + NEAT1 chr11 65422774 65445540 + NORAD chr20 36045618 36051018 - SNHG16 chr17 76557764 76565348 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE120584 Sample Source: Blood Source Fraction: Serum Platform: GPL21263 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 2532 Sample treatment protocol: NA RNA Extract protocol: Total RNA was extracted each from 300uL serum samples using 3D-Gene® RNA extraction reagent from liquid sample kit (Toray Industries, Inc.). RNA library preparation protocol: miRNA was labeled using 3D-Gene® miRNA Labeling kit in accordance with the manufacturer's instructions.

Reference

PMID: 30820472 Title: Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data Author: Shigemizu D, Akiyama S, Asanomi Y, Boroevich KA, Sharma A, Tsunoda T, Matsukuma K, Ichikawa M, Sudo H, Takizawa S, Sakurai T, Ozaki K, Ochiya T, Niida S Journal: Commun Biol. 2019 Feb 25;2:77. Description: we investigated potential miRNA biomarkers and constructed risk prediction models, based on a supervised principal component analysis (PCA) logistic regression method, according to the subtype of dementia