exRNAdisease

Entry Detail

General Information

Database ID:

exR0196820

RNA Name:

hsa-miR-338-3p

RNA Type:

miRNA

Chromosome:

chr17

Starnd:

-

Coordinate:

Start Site(bp):

81125887

End Site(bp):

81125908

External Links:

Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:

Expression Detail

GEO ID:	GSE120584
Description:	Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data
Experimental Design:	Disease vs Control
Case Disease Type:	Alzheimer's Disease
Case Disease SubType:	NA
Case Sample:	Alzheimer's Disease
Control Sample:	Normal
Number of Case:	1021
Number of Control:	288
Number of Samples:	1309

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
ADCY9	chr16	3953387	4116442	-
ARPC1B	chr7	99374249	99394816	+
CALU	chr7	128739292	128773400	+
CDT1	chr16	88803789	88809258	+
ENSA	chr1	150600851	150629612	-
ERG28	chr14	75649791	75660876	-
GTSE1	chr22	46296870	46330810	+
KDSR	chr18	63327726	63367228	-
NONO	chrX	71283192	71301168	+
PALLD	chr4	168497052	168928457	+
PURB	chr7	44876299	44885530	-
RAB14	chr9	121178133	121223014	-
TANC2	chr17	63009556	63427699	+
TRIM33	chr1	114392790	114511203	-

miRNA targets:

NA

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0001025	chr2	69565029	69565697	-
hsa_circ_0000284	chr11	33307958	33309057	+
hsa_circ_0001085	chr2	191765289	191789319	+

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC008738.7	chr19	33207129	33207639	+
AC109460.3	chr16	28974804	28990775	+
KCNQ1OT1	chr11	2608328	2699994	-
LINC00943	chr12	126723412	126749027	+
MALAT1	chr11	65497688	65506516	+
NEAT1	chr11	65422774	65445540	+
OIP5-AS1	chr15	41283990	41309737	+
SDCBP2-AS1	chr20	1325405	1378735	+
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE120584
Sample Source:	Blood
Source Fraction:	Serum
Platform:	GPL21263
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	2532
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted each from 300uL serum samples using 3D-Gene® RNA extraction reagent from liquid sample kit (Toray Industries, Inc.).
RNA library preparation protocol:	miRNA was labeled using 3D-Gene® miRNA Labeling kit in accordance with the manufacturer's instructions.

Reference

PMID:	30820472
Title:	Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data
Author:	Shigemizu D, Akiyama S, Asanomi Y, Boroevich KA, Sharma A, Tsunoda T, Matsukuma K, Ichikawa M, Sudo H, Takizawa S, Sakurai T, Ozaki K, Ochiya T, Niida S
Journal:	Commun Biol. 2019 Feb 25;2:77.
Description:	we investigated potential miRNA biomarkers and constructed risk prediction models, based on a supervised principal component analysis (PCA) logistic regression method, according to the subtype of dementia