exRNAdisease

Entry Detail

General Information

Database ID:

exR0198029

RNA Name:

hsa-miR-624-3p

RNA Type:

miRNA

Chromosome:

chr14

Starnd:

-

Coordinate:

Start Site(bp):

31014669

End Site(bp):

31014689

External Links:

Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:

Expression Detail

GEO ID:	GSE120584
Description:	Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data
Experimental Design:	Disease vs Control
Case Disease Type:	Alzheimer's Disease
Case Disease SubType:	NA
Case Sample:	Alzheimer's Disease
Control Sample:	Normal
Number of Case:	1021
Number of Control:	288
Number of Samples:	1309

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
CBL	chr11	119206298	119313926	+
GPCPD1	chr20	5544439	5611006	-
MDK	chr11	46380756	46383837	+
PTPA	chr9	129110950	129148946	+
SOBP	chr6	107490106	107661306	+
VANGL1	chr1	115641970	115698224	+
WSB2	chr12	118032694	118062430	-
ZBTB5	chr9	37438102	37465450	-

miRNA targets:

NA

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0000095	chr1	95609446	95616975	+
hsa_circ_0000698	chr16	47531309	47549512	+
hsa_circ_0000552	chr14	71880664	71948928	+
hsa_circ_0001376	chr3	194169185	194175121	-

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC005034.3	chr2	75697583	75697996	+
AC010327.5	chr19	55216660	55221616	+
AC016876.2	chr17	7581964	7584086	-
AL162171.3	chr14	88589231	88592408	+
ARHGAP27P1-BPTFP1-KPNA2P3	chr17	64749663	64781707	-
DHRS4-AS1	chr14	23938219	24052555	-
MIR17HG	chr13	91347820	91354579	+
NEAT1	chr11	65422774	65445540	+
SNHG1	chr11	62851984	62855953	-
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE120584
Sample Source:	Blood
Source Fraction:	Serum
Platform:	GPL21263
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	2532
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted each from 300uL serum samples using 3D-Gene® RNA extraction reagent from liquid sample kit (Toray Industries, Inc.).
RNA library preparation protocol:	miRNA was labeled using 3D-Gene® miRNA Labeling kit in accordance with the manufacturer's instructions.

Reference

PMID:	30820472
Title:	Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data
Author:	Shigemizu D, Akiyama S, Asanomi Y, Boroevich KA, Sharma A, Tsunoda T, Matsukuma K, Ichikawa M, Sudo H, Takizawa S, Sakurai T, Ozaki K, Ochiya T, Niida S
Journal:	Commun Biol. 2019 Feb 25;2:77.
Description:	we investigated potential miRNA biomarkers and constructed risk prediction models, based on a supervised principal component analysis (PCA) logistic regression method, according to the subtype of dementia