exRNAdisease

Entry Detail

General Information

Database ID:

exR0198626

RNA Name:

hsa-miR-873-3p

RNA Type:

miRNA

Chromosome:

chr9

Starnd:

-

Coordinate:

Start Site(bp):

28888889

End Site(bp):

28888910

External Links:

Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:

Expression Detail

GEO ID:	GSE120584
Description:	Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data
Experimental Design:	Disease vs Control
Case Disease Type:	Alzheimer's Disease
Case Disease SubType:	NA
Case Sample:	Alzheimer's Disease
Control Sample:	Normal
Number of Case:	1021
Number of Control:	288
Number of Samples:	1309

Regulatory Relationship

mRNA targets:

NA

miRNA targets:

NA

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0001658	chr6	157357968	157406039	+
hsa_circ_0000798	chr17	65941524	65944422	+
hsa_circ_0001387	chr4	1902352	1936989	+
hsa_circ_0000799	chr17	65941524	65972074	+

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC020978.4	chr16	68236845	68237667	-
AC021078.1	chr5	149494314	149504670	-
AC023509.1	chr12	53441741	53467528	+
CYTOR	chr2	87454781	87636740	+
EBLN3P	chr9	37079645	37090928	+
KCNQ1OT1	chr11	2608328	2699994	-
LINC00265	chr7	39733430	39793092	+
LINC00641	chr14	21200079	21206900	-
LINC00665	chr19	36313067	36331770	-
MIR4435-2HG	chr2	111006015	111523376	-
NORAD	chr20	36045618	36051018	-
PARD6G-AS1	chr18	80147924	80179839	+
PCBP2-OT1	chr12	53464468	53465057	+
SNHG16	chr17	76557764	76565348	+
SNHG8	chr4	118278709	118285316	+
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE120584
Sample Source:	Blood
Source Fraction:	Serum
Platform:	GPL21263
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	2532
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted each from 300uL serum samples using 3D-Gene® RNA extraction reagent from liquid sample kit (Toray Industries, Inc.).
RNA library preparation protocol:	miRNA was labeled using 3D-Gene® miRNA Labeling kit in accordance with the manufacturer's instructions.

Reference

PMID:	30820472
Title:	Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data
Author:	Shigemizu D, Akiyama S, Asanomi Y, Boroevich KA, Sharma A, Tsunoda T, Matsukuma K, Ichikawa M, Sudo H, Takizawa S, Sakurai T, Ozaki K, Ochiya T, Niida S
Journal:	Commun Biol. 2019 Feb 25;2:77.
Description:	we investigated potential miRNA biomarkers and constructed risk prediction models, based on a supervised principal component analysis (PCA) logistic regression method, according to the subtype of dementia