exRNAdisease

General Information

Database ID:

exR0206895

RNA Name:

SNHG16

RNA Type:

lncRNA

Chromosome:

chr17

Starnd:

Coordinate:

Start Site(bp):

76557764

End Site(bp):

76565348

External Links:

Disease Information

Disease Name:	Subarachnoid Hemorrhage
Disease Category:	Nervous System Diseases
MeSH ID:	D013345
Type:	Diseases Category/Nervous System Diseases
Alias:	SAH (Subarachnoid Hemorrhage)//SAHs (Subarachnoid Hemorrhage)//Hemorrhage, Subarachnoid//Hemorrhages, Subarachnoid//Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Aneurysmal//Aneurysmal Subarachnoid Hemorrhage//Aneurysmal Subarachnoid Hemorrhages//Hemorrhage, Aneurysmal Subarachnoid//Hemorrhages, Aneurysmal Subarachnoid//Subarachnoid Hemorrhages, Aneurysmal//Subarachnoid Hemorrhage, Spontaneous//Hemorrhage, Spontaneous Subarachnoid//Hemorrhages, Spontaneous Subarachnoid//Spontaneous Subarachnoid Hemorrhage//Spontaneous Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Spontaneous//Perinatal Subarachnoid Hemorrhage//Hemorrhage, Perinatal Subarachnoid//Hemorrhages, Perinatal Subarachnoid//Perinatal Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Perinatal//Subarachnoid Hemorrhages, Perinatal//Subarachnoid Hemorrhage, Intracranial//Hemorrhage, Intracranial Subarachnoid//Hemorrhages, Intracranial Subarachnoid//Intracranial Subarachnoid Hemorrhage//Intracranial Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Intracranial

Expression Detail

GEO ID:	GSE121868
Description:	Profiles of Extracellular RNA in Cerebrospinal Fluid and Plasma from Subarachnoid Hemorrhage Patients
Experimental Design:	Disease Sample Source
Case Disease Type:	Subarachnoid Hemorrhage
Case Disease SubType:	NA
Case Sample:	Subarachnoid Hemorrhage
Control Sample:	Blood Plasma
Number of Case:	257
Number of Control:	266
Number of Samples:	523

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC015802.6	chr17	76563710	76570544	-
AC015813.2	chr17	57989038	58007246	-
AC245033.1	chr15	82536788	82573194	-
ACTG1	chr17	81509971	81523847	-
AGPAT1	chr6	32168212	32178096	-
AL022238.4	chr22	40346529	40410054	+
AC138969.1	chr16	16317444	16350590	+
ACP5	chr19	11574660	11579008	-
ADAMTS15	chr11	130448974	130476641	+
AIMP1	chr4	106315544	106349456	+
ALDH3A2	chr17	19648136	19685760	+

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-miR-195-5p	chr17	7017667	7017687	-
hsa-miR-15b-5p	chr3	160404607	160404628	+
hsa-miR-421	chrX	74218392	74218414	-
hsa-miR-302d-3p	chr4	112648006	112648028	-
hsa-miR-216a-3p	chr2	55988981	55989002	-
hsa-miR-4458	chr5	8460933	8460951	+
hsa-miR-500b-5p	chrX	50010682	50010699	+
hsa-miR-4500	chr13	87618671	87618687	-
hsa-miR-372-3p	chr19	53787931	53787953	+
hsa-miR-508-3p	chrX	147236945	147236967	-
hsa-miR-510-5p	chrX	147272378	147272399	-
hsa-miR-3619-5p	chr22	46091059	46091080	+
hsa-miR-2467-3p	chr2	239351732	239351753	-
hsa-miR-2681-3p	chr13	101967665	101967686	-
hsa-miR-664b-3p	chrX	154768635	154768656	+
hsa-miR-761	chr1	51836375	51836396	-
hsa-miR-30b-5p	chr8	134800570	134800591	-
hsa-miR-5047	chr17	64501230	64501250	-
hsa-miR-6823-3p	chr3	48549961	48549981	-
hsa-miR-196b-5p	chr7	27169528	27169549	-
hsa-let-7i-5p	chr12	62603691	62603712	+
hsa-miR-193a-5p	chr17	31560016	31560037	+
hsa-miR-30d-5p	chr8	134804919	134804940	-
hsa-miR-20a-5p	chr13	91351072	91351094	+
hsa-miR-141-3p	chr12	6964155	6964176	+
hsa-miR-212-3p	chr17	2050290	2050310	-
hsa-let-7c-5p	chr21	16539838	16539859	+
hsa-miR-1301-3p	chr2	25328651	25328674	-
hsa-miR-424-5p	chrX	134546680	134546701	-
hsa-miR-485-5p	chr14	101055427	101055448	+

circRNA targets:

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC007952.4	chr17	19112000	19112636	-
AC007996.1	chr18	26542971	26545791	-
AC093827.4	chr4	86924630	86936202	-
AC138904.1	chr16	28284885	28292064	-
AC245014.3	chr1	145281116	145281462	+

Display:

Experiment Detail

GEO ID:	GSE121868
Sample Source:	Blood
Source Fraction:	Plasma
Platform:	GPL11154
Method:	NGS
Num of detected RNA Type:	5
Num of detected RNAs of this Type:	820
Sample treatment protocol:	NA
RNA Extract protocol:	total RNA RNA was isolated using MiRVana Paris (Ambion).
RNA library preparation protocol:	TruSeq Small RNA library prep kit (Illumina) was used. Samples were not multiplexed. Strand specificity is non-stranded. Type of starting material is total RNA.

Reference