exRNAdisease

General Information

Database ID:

exR0209139

RNA Name:

AGTRAP

RNA Type:

mRNA

Chromosome:

chr1

Starnd:

Coordinate:

Start Site(bp):

11736084

End Site(bp):

11754802

External Links:

Disease Information

Disease Name:	Subarachnoid Hemorrhage
Disease Category:	Nervous System Diseases
MeSH ID:	D013345
Type:	Diseases Category/Nervous System Diseases
Alias:	SAH (Subarachnoid Hemorrhage)//SAHs (Subarachnoid Hemorrhage)//Hemorrhage, Subarachnoid//Hemorrhages, Subarachnoid//Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Aneurysmal//Aneurysmal Subarachnoid Hemorrhage//Aneurysmal Subarachnoid Hemorrhages//Hemorrhage, Aneurysmal Subarachnoid//Hemorrhages, Aneurysmal Subarachnoid//Subarachnoid Hemorrhages, Aneurysmal//Subarachnoid Hemorrhage, Spontaneous//Hemorrhage, Spontaneous Subarachnoid//Hemorrhages, Spontaneous Subarachnoid//Spontaneous Subarachnoid Hemorrhage//Spontaneous Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Spontaneous//Perinatal Subarachnoid Hemorrhage//Hemorrhage, Perinatal Subarachnoid//Hemorrhages, Perinatal Subarachnoid//Perinatal Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Perinatal//Subarachnoid Hemorrhages, Perinatal//Subarachnoid Hemorrhage, Intracranial//Hemorrhage, Intracranial Subarachnoid//Hemorrhages, Intracranial Subarachnoid//Intracranial Subarachnoid Hemorrhage//Intracranial Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Intracranial

Expression Detail

GEO ID:	GSE121868
Description:	Profiles of Extracellular RNA in Cerebrospinal Fluid and Plasma from Subarachnoid Hemorrhage Patients
Experimental Design:	Disease Sample Source
Case Disease Type:	Subarachnoid Hemorrhage
Case Disease SubType:	NA
Case Sample:	Subarachnoid Hemorrhage
Control Sample:	Blood Plasma
Number of Case:	257
Number of Control:	266
Number of Samples:	523

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
LDHA	chr11	18394560	18408425	+
STK4	chr20	44966479	45080021	+
ACPP	chr3	132317369	132368298	+
HOXB1	chr17	48528526	48531011	-
TMSB4X	chrX	12975110	12977227	+
PAFAH1B3	chr19	42297033	42303546	-
KDM3A	chr2	86440647	86492716	+
ICE1	chr5	5420664	5490220	+
CCDC88C	chr14	91271323	91417844	-
TUBA1C	chr12	49188736	49274603	+
POGK	chr1	166839447	166856344	+
NUCB1	chr19	48900312	48923372	+
RPL30	chr8	98024851	98046469	-
HSF1	chr8	144291591	144314720	+
PABPC3	chr13	25095868	25099254	+
PABPN1	chr14	23321289	23326185	+
KRT19	chr17	41523617	41528308	-
SLC2A13	chr12	39755025	40106089	-
UBE2T	chr1	202331657	202341980	-
XPC	chr3	14145147	14178783	-
FUS	chr16	31180110	31194871	+
TJAP1	chr6	43477523	43506556	+
MAD2L2	chr1	11674480	11691650	-
CNPY3	chr6	42929192	42939294	+
STAT5B	chr17	42199177	42276707	-
SCARB1	chr12	124776856	124882668	-
IQGAP1	chr15	90388242	90502239	+
SND1	chr7	127652194	128092609	+
HLA-B	chr6	31269491	31357188	-
APEH	chr3	49674014	49683971	+

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-miR-34a-5p	chr1	9151735	9151756	-
hsa-miR-188-5p	chrX	50003517	50003537	+
hsa-miR-34c-5p	chr11	111513451	111513473	+
hsa-miR-324-5p	chr17	7223343	7223364	-
hsa-miR-654-5p	chr14	101040234	101040255	+
hsa-miR-129-2-3p	chr11	43581450	43581471	+
hsa-miR-330-5p	chr19	45639049	45639070	-
hsa-miR-628-5p	chr15	55372991	55373012	-
hsa-miR-541-3p	chr14	101064548	101064569	+

circRNA targets:

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AD000090.1	chr19	35557956	35581954	+
MIR663AHG	chr20	26167817	26251546	-

Display:

Experiment Detail

GEO ID:	GSE121868
Sample Source:	Blood
Source Fraction:	Plasma
Platform:	GPL11154
Method:	NGS
Num of detected RNA Type:	5
Num of detected RNAs of this Type:	17671
Sample treatment protocol:	NA
RNA Extract protocol:	total RNA RNA was isolated using MiRVana Paris (Ambion).
RNA library preparation protocol:	TruSeq Small RNA library prep kit (Illumina) was used. Samples were not multiplexed. Strand specificity is non-stranded. Type of starting material is total RNA.

Reference