Entry Detail



General Information

Database ID:exR0215064
RNA Name:HMGA1
RNA Type:mRNA
Chromosome:chr6
Starnd:+
Coordinate:
Start Site(bp):34236873End Site(bp):34246231
External Links:ENSG00000137309



Disease Information

Disease Name:Subarachnoid Hemorrhage
Disease Category:Nervous System Diseases
MeSH ID:D013345
Type:Diseases Category/Nervous System Diseases
Alias:SAH (Subarachnoid Hemorrhage)//SAHs (Subarachnoid Hemorrhage)//Hemorrhage, Subarachnoid//Hemorrhages, Subarachnoid//Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Aneurysmal//Aneurysmal Subarachnoid Hemorrhage//Aneurysmal Subarachnoid Hemorrhages//Hemorrhage, Aneurysmal Subarachnoid//Hemorrhages, Aneurysmal Subarachnoid//Subarachnoid Hemorrhages, Aneurysmal//Subarachnoid Hemorrhage, Spontaneous//Hemorrhage, Spontaneous Subarachnoid//Hemorrhages, Spontaneous Subarachnoid//Spontaneous Subarachnoid Hemorrhage//Spontaneous Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Spontaneous//Perinatal Subarachnoid Hemorrhage//Hemorrhage, Perinatal Subarachnoid//Hemorrhages, Perinatal Subarachnoid//Perinatal Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Perinatal//Subarachnoid Hemorrhages, Perinatal//Subarachnoid Hemorrhage, Intracranial//Hemorrhage, Intracranial Subarachnoid//Hemorrhages, Intracranial Subarachnoid//Intracranial Subarachnoid Hemorrhage//Intracranial Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Intracranial



Expression Detail

GEO ID:GSE121868
Description:Profiles of Extracellular RNA in Cerebrospinal Fluid and Plasma from Subarachnoid Hemorrhage Patients
Experimental Design:Disease Sample Source
Case Disease Type:Subarachnoid Hemorrhage
Case Disease SubType:NA
Case Sample:Subarachnoid Hemorrhage
Control Sample:Blood Plasma
Number of Case:257
Number of Control:266
Number of Samples:523





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ACTR2
chr2
65227753
65271253
+
ADNP
chr20
50888916
50931437
-
AKR7A2
chr1
19303965
19312146
-
ADH5
chr4
99070978
99088801
-
ADM
chr11
10305073
10307397
+
AC008982.1
chr19
38817471
38840178
-
ADGRL1
chr19
14147743
14206187
-
AGPAT1
chr6
32168212
32178096
-
ADGRA3
chr4
22345071
22516066
-
AGFG2
chr7
100539203
100568220
+
ACLY
chr17
41866917
41930542
-
AJUBA
chr14
22971177
22982551
-
AK4
chr1
65147549
65232145
+
AAMP
chr2
218264123
218270257
-
AC009133.6
chr16
29812261
29820092
+
AHCYL2
chr7
129225023
129430211
+
AC068547.1
chr2
151802651
151973949
-
AC015813.2
chr17
57989038
58007246
-
AKAP13
chr15
85380571
85749358
+
AFTPH
chr2
64524305
64593005
+
AK5
chr1
77282019
77559966
+
ADRM1
chr20
62302093
62308862
+
ACER3
chr11
76860867
77026797
+
AL121594.1
chr14
35122549
35317474
+
ACTA1
chr1
229431245
229434098
-
AHCY
chr20
34280268
34311802
-
ABRACL
chr6
139028745
139043302
+
ADARB1
chr21
45073853
45226560
+
AL136454.1
chr1
192716132
192716653
+
ACAD10
chr12
111686056
111757107
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-let-7a-5p
chr9
94175962
94175983
+
hsa-let-7d-5p
chr9
94178841
94178862
+
hsa-let-7e-5p
chr19
51692793
51692814
+
hsa-miR-21-5p
chr17
59841273
59841294
+
hsa-miR-138-5p
chr16
56858527
56858549
+
hsa-miR-423-5p
chr17
30117095
30117117
+
hsa-miR-1321
chrX
85835832
85835849
+
hsa-miR-3654
chr7
133034860
133034878
-
hsa-miR-6835-3p
chr6
34240714
34240736
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007952.4
chr17
19112000
19112636
-
AC010331.1
chr19
47607873
47608454
-
AC016876.2
chr17
7581964
7584086
-
AC019205.1
chr6
73263212
73301789
+
AC020663.1
chr16
4730115
4752565
-
AC020928.2
chr19
36773712
36775908
-
AC025271.4
chr15
57553955
57555680
+
AC079781.5
chr7
97851688
97972985
-
AC104971.1
chr18
58670009
58671877
-
AC126365.1
chr17
20788071
20789584
+
AC132217.1
chr11
2129121
2129964
-
AD000090.1
chr19
35557956
35581954
+
AL022311.1
chr22
37876148
37895563
+
AL117378.1
chr6
131901963
131920565
+
AL132780.1
chr14
22929607
22956374
+
Display:



Experiment Detail

GEO ID:GSE121868
Sample Source:Blood
Source Fraction:Plasma
Platform:GPL11154
Method:NGS
Num of detected RNA Type:5
Num of detected RNAs of this Type:17671
Sample treatment protocol:NA
RNA Extract protocol:total RNA RNA was isolated using MiRVana Paris (Ambion).
RNA library preparation protocol:TruSeq Small RNA library prep kit (Illumina) was used. Samples were not multiplexed. Strand specificity is non-stranded. Type of starting material is total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA