exRNAdisease

General Information

Database ID:

exR0223843

RNA Name:

TOB2

RNA Type:

mRNA

Chromosome:

chr22

Starnd:

Coordinate:

Start Site(bp):

41433494

End Site(bp):

41446801

External Links:

Disease Information

Disease Name:	Subarachnoid Hemorrhage
Disease Category:	Nervous System Diseases
MeSH ID:	D013345
Type:	Diseases Category/Nervous System Diseases
Alias:	SAH (Subarachnoid Hemorrhage)//SAHs (Subarachnoid Hemorrhage)//Hemorrhage, Subarachnoid//Hemorrhages, Subarachnoid//Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Aneurysmal//Aneurysmal Subarachnoid Hemorrhage//Aneurysmal Subarachnoid Hemorrhages//Hemorrhage, Aneurysmal Subarachnoid//Hemorrhages, Aneurysmal Subarachnoid//Subarachnoid Hemorrhages, Aneurysmal//Subarachnoid Hemorrhage, Spontaneous//Hemorrhage, Spontaneous Subarachnoid//Hemorrhages, Spontaneous Subarachnoid//Spontaneous Subarachnoid Hemorrhage//Spontaneous Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Spontaneous//Perinatal Subarachnoid Hemorrhage//Hemorrhage, Perinatal Subarachnoid//Hemorrhages, Perinatal Subarachnoid//Perinatal Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Perinatal//Subarachnoid Hemorrhages, Perinatal//Subarachnoid Hemorrhage, Intracranial//Hemorrhage, Intracranial Subarachnoid//Hemorrhages, Intracranial Subarachnoid//Intracranial Subarachnoid Hemorrhage//Intracranial Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Intracranial

Expression Detail

GEO ID:	GSE121868
Description:	Profiles of Extracellular RNA in Cerebrospinal Fluid and Plasma from Subarachnoid Hemorrhage Patients
Experimental Design:	Disease Sample Source
Case Disease Type:	Subarachnoid Hemorrhage
Case Disease SubType:	NA
Case Sample:	Subarachnoid Hemorrhage
Control Sample:	Blood Plasma
Number of Case:	257
Number of Control:	266
Number of Samples:	523

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
ABL1	chr9	130713016	130887675	+
AC004922.1	chr7	99325879	99394653	+
AC008878.3	chr19	7382834	7470241	+
ACBD6	chr1	180269653	180502954	-
ADGRA3	chr4	22345071	22516066	-
AHCY	chr20	34280268	34311802	-
AKAP1	chr17	57085092	57121346	+
AL136295.4	chr14	24180395	24190416	-

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-miR-16-5p	chr3	160404754	160404775	+
hsa-miR-23a-3p	chr19	13836595	13836615	-
hsa-miR-103a-3p	chr5	168560904	168560926	-
hsa-miR-107	chr10	89592756	89592778	-
hsa-miR-34a-5p	chr1	9151735	9151756	-
hsa-miR-23b-3p	chr9	95085265	95085287	+
hsa-miR-135a-5p	chr12	97563834	97563856	+
hsa-miR-195-5p	chr17	7017667	7017687	-
hsa-miR-34c-5p	chr11	111513451	111513473	+
hsa-miR-378a-3p	chr5	149732867	149732888	+
hsa-miR-135b-5p	chr1	205448361	205448383	-
hsa-miR-422a	chr15	63870989	63871010	-
hsa-miR-424-5p	chrX	134546680	134546701	-
hsa-miR-432-5p	chr14	100884496	100884518	+
hsa-miR-512-3p	chr19	53666729	53666750	+
hsa-miR-520a-5p	chr19	53690895	53690915	+
hsa-miR-545-3p	chrX	74287126	74287147	-
hsa-miR-654-5p	chr14	101040234	101040255	+
hsa-miR-708-5p	chr11	79402077	79402099	-

circRNA targets:

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC064802.1	chr8	114282067	114295839	+
AD000090.1	chr19	35557956	35581954	+
AL117378.1	chr6	131901963	131920565	+

Display:

Experiment Detail

GEO ID:	GSE121868
Sample Source:	Blood
Source Fraction:	Plasma
Platform:	GPL11154
Method:	NGS
Num of detected RNA Type:	5
Num of detected RNAs of this Type:	17671
Sample treatment protocol:	NA
RNA Extract protocol:	total RNA RNA was isolated using MiRVana Paris (Ambion).
RNA library preparation protocol:	TruSeq Small RNA library prep kit (Illumina) was used. Samples were not multiplexed. Strand specificity is non-stranded. Type of starting material is total RNA.

Reference