exRNAdisease

Entry Detail

---



General Information

Database ID: exR0259372 RNA Name: hsa-miR-200b-3p RNA Type: miRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 1167160 End Site(bp): 1167181 External Links: hsa-miR-200b-3p

Disease Information

Disease Name: Chronic Pancreatitis Disease Category: Digestive System Diseases MeSH ID: D050500 Type: Diseases Category/Digestive System Diseases Alias: Pancreatitis, Chronic//Chronic Pancreatitis

Expression Detail

GEO ID: GSE128508 Description: Comprehensive analysis of exosomal miRNA in type 1 autoimmune pancreatitis Experimental Design: Disease vs Control Case Disease Type: Chronic Pancreatitis Case Disease SubType: NA Case Sample: Chronic Pancreatitis Control Sample: Healthy Number of Case: 10 Number of Control: 10 Number of Samples: 20

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CHD9 chr16 53055033 53329150 + KLF3 chr4 38664197 38701517 + NRBP1 chr2 27427790 27442259 + SHCBP1 chr16 46578591 46621379 - SRP72 chr4 56467617 56503681 + THAP2 chr12 71664301 71680644 + VMP1 chr17 59707192 59842255 + miRNA targets: NA circRNA targets: circRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa_circ_0001186 chr21 35475133 35475818 + hsa_circ_0001731 chr7 100731990 100738448 + hsa_circ_0001486 chr5 56526672 56527148 + hsa_circ_0000552 chr14 71880664 71948928 + hsa_circ_0001358 chr3 169694733 169706147 + lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC024940.6 chr12 31280422 31280895 - AC092295.2 chr19 36489649 36491040 + AC116913.1 chr15 66488658 66492109 - AF254983.1 chr21 10482738 10605716 + AL049840.4 chr14 103694516 103695050 - LINC00667 chr18 5237826 5290608 + MALAT1 chr11 65497688 65506516 + NEAT1 chr11 65422774 65445540 + OIP5-AS1 chr15 41283990 41309737 + SNHG22 chr18 49814023 49851059 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE128508 Sample Source: Blood Source Fraction: Exosome Platform: GPL21263 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1958 Sample treatment protocol: Exosomes were isolated using the ExoQuick exosome precipitation kit. RNA Extract protocol: total RNA was extracted from cells using miRNesy mini kit (Qiagen). RNA library preparation protocol: Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray, Kamakura, Japan).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA