Entry Detail


General Information

Database ID:exR0349470
RNA Name:hsa-miR-122-5p
RNA Type:miRNA
Chromosome:chr18
Starnd:+
Coordinate:
Start Site(bp):58451088End Site(bp):58451109
External Links:hsa-miR-122-5p



Disease Information

Disease Name:Hepatocellular Carcinoma
Disease Category:Cancers
MeSH ID:D006528
Type:Neoplasms/Digestive System Neoplasms
Alias:Carcinoma, Hepatocellular//Carcinomas, Hepatocellular//Hepatocellular Carcinomas//Liver Cell Carcinoma, Adult//Liver Cancer, Adult//Adult Liver Cancer//Adult Liver Cancers//Cancer, Adult Liver//Cancers, Adult Liver//Liver Cancers, Adult//Liver Cell Carcinoma//Carcinoma, Liver Cell//Carcinomas, Liver Cell//Cell Carcinoma, Liver//Cell Carcinomas, Liver//Liver Cell Carcinomas//Hepatocellular Carcinoma//Hepatoma//Hepatomas



Expression Detail

GEO ID:GSE85679
Description:Serum miRNA in liver disease
Experimental Design:Surgery treatment
Case Disease Type:Hepatocellular Carcinoma
Case Disease SubType:NA
Case Sample:Hepatocellular Carcinoma Post surgery 4
Control Sample:Pre surgery
Number of Case:98
Number of Control:98
Number of Samples:196





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
MSI2
chr17
57255851
57684689
+
FAM102A
chr9
127940582
127980989
-
NAGK
chr2
71064344
71079808
+
SPRED2
chr2
65310851
65432637
-
HGSNAT
chr8
43140464
43202855
+
PPDPF
chr20
63520765
63522206
+
SH3GL1
chr19
4360370
4400547
-
SETD1A
chr16
30957754
30984664
+
PEA15
chr1
160205337
160215376
+
C19orf54
chr19
40740856
40751553
-
PIP4K2A
chr10
22534854
22714578
-
RPRD1B
chr20
38033725
38127780
+
CACNG4
chr17
66964707
67033398
+
SOX11
chr2
5692384
5701385
+
IGFBP5
chr2
216672105
216695549
-
RAB1B
chr11
66268590
66277492
+
CSRP1
chr1
201483530
201509456
-
VTI1A
chr10
112446998
112818744
+
ZNF3
chr7
100064033
100082548
-
NHLRC3
chr13
39038306
39050109
+
ZNF614
chr19
52012765
52030240
-
NDOR1
chr9
137205685
137217009
+
ALDOA
chr16
30064164
30070457
+
GRK3
chr22
25564675
25729294
+
C19orf47
chr19
40319536
40348527
-
SLC9A1
chr1
27098809
27166981
-
STK4
chr20
44966479
45080021
+
IER2
chr19
13150411
13154911
+
PRR12
chr19
49591182
49626439
+
KRT7
chr12
52232520
52252186
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC021092.1
chr19
44103007
44113183
-
AC103702.1
chr17
48579630
48582259
-
AL358472.3
chr1
153966516
153966930
+
AL645465.1
chr1
244375100
244409592
-
DSCAM-AS1
chr21
40383083
40385358
+
NEAT1
chr11
65422774
65445540
+
SNHG7
chr9
136721366
136728184
-
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE85679
Sample Source:Blood
Source Fraction:Serum
Platform:GPL18941
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:2524
Sample treatment protocol:NA
RNA Extract protocol:RNA samples were extracted from serum using 3D-Gene RNA extraction reagent from liquid sampld (Toray Industries Inc., Tokyo, Japan).
RNA library preparation protocol:Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray Industries Inc., Tokyo, Japan).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA