Entry Detail


General Information

Database ID:exR0349859
RNA Name:hsa-miR-27a-3p
RNA Type:miRNA
Chromosome:chr19
Starnd:-
Coordinate:
Start Site(bp):13836447End Site(bp):13836467
External Links:hsa-miR-27a-3p



Disease Information

Disease Name:Hepatocellular Carcinoma
Disease Category:Cancers
MeSH ID:D006528
Type:Neoplasms/Digestive System Neoplasms
Alias:Carcinoma, Hepatocellular//Carcinomas, Hepatocellular//Hepatocellular Carcinomas//Liver Cell Carcinoma, Adult//Liver Cancer, Adult//Adult Liver Cancer//Adult Liver Cancers//Cancer, Adult Liver//Cancers, Adult Liver//Liver Cancers, Adult//Liver Cell Carcinoma//Carcinoma, Liver Cell//Carcinomas, Liver Cell//Cell Carcinoma, Liver//Cell Carcinomas, Liver//Liver Cell Carcinomas//Hepatocellular Carcinoma//Hepatoma//Hepatomas



Expression Detail

GEO ID:GSE85679
Description:Serum miRNA in liver disease
Experimental Design:Surgery treatment
Case Disease Type:Hepatocellular Carcinoma
Case Disease SubType:NA
Case Sample:Hepatocellular Carcinoma Post surgery 4
Control Sample:Pre surgery
Number of Case:98
Number of Control:98
Number of Samples:196





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
IGF2BP3
chr7
23310209
23470491
-
SOX11
chr2
5692384
5701385
+
AEN
chr15
88621337
88632281
+
SUCO
chr1
172532349
172611833
+
ALDH3A2
chr17
19648136
19685760
+
CD2AP
chr6
47477789
47627263
+
TTYH3
chr7
2631986
2664802
+
C1orf116
chr1
207018522
207032756
-
GLTP
chr12
109850945
109880541
-
PAX9
chr14
36657568
36679362
+
TMEM30A
chr6
75252924
75284948
-
NUAK1
chr12
106063340
106140033
-
LGALS8
chr1
236518000
236552981
+
ACER3
chr11
76860867
77026797
+
NEK2
chr1
211658657
211675630
-
CDR2
chr16
22345936
22437165
-
B4GALT3
chr1
161171310
161177968
-
JRK
chr8
142657460
142681968
-
KCNK1
chr1
233614106
233672514
+
ACLY
chr17
41866917
41930542
-
TMX4
chr20
7977346
8019805
-
PPP1CC
chr12
110719680
110742939
-
KPNA6
chr1
32108056
32176563
+
HTT
chr4
3041422
3243960
+
NF1
chr17
31094927
31382116
+
ETNK1
chr12
22625075
22690665
+
ZBTB34
chr9
126860665
126885878
+
CANX
chr5
179678628
179731641
+
PAK1
chr11
77321707
77474635
-
GIPC1
chr19
14477760
14496149
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000384
chr12
27867712
27877119
+
hsa_circ_0001247
chr22
46125304
46136418
+
hsa_circ_0000942
chr19
46020920
46021352
+
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC010980.2
chr2
222317242
222318653
-
AC021092.1
chr19
44103007
44113183
-
AC022150.4
chr19
52650437
52653284
-
AC093010.3
chr3
114314501
114329714
-
AL050341.2
chr1
40256427
40257967
-
KCNQ1OT1
chr11
2608328
2699994
-
LINC01089
chr12
121795267
121803906
-
LINC02381
chr12
54126082
54147485
+
NEAT1
chr11
65422774
65445540
+
SDCBP2-AS1
chr20
1325405
1378735
+
SNHG22
chr18
49814023
49851059
+
TUG1
chr22
30969245
30979395
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE85679
Sample Source:Blood
Source Fraction:Serum
Platform:GPL18941
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:2524
Sample treatment protocol:NA
RNA Extract protocol:RNA samples were extracted from serum using 3D-Gene RNA extraction reagent from liquid sampld (Toray Industries Inc., Tokyo, Japan).
RNA library preparation protocol:Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray Industries Inc., Tokyo, Japan).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA