Entry Detail


General Information

Database ID:exR0349878
RNA Name:hsa-miR-29c-3p
RNA Type:miRNA
Chromosome:chr1
Starnd:-
Coordinate:
Start Site(bp):207801865End Site(bp):207801886
External Links:hsa-miR-29c-3p



Disease Information

Disease Name:Hepatocellular Carcinoma
Disease Category:Cancers
MeSH ID:D006528
Type:Neoplasms/Digestive System Neoplasms
Alias:Carcinoma, Hepatocellular//Carcinomas, Hepatocellular//Hepatocellular Carcinomas//Liver Cell Carcinoma, Adult//Liver Cancer, Adult//Adult Liver Cancer//Adult Liver Cancers//Cancer, Adult Liver//Cancers, Adult Liver//Liver Cancers, Adult//Liver Cell Carcinoma//Carcinoma, Liver Cell//Carcinomas, Liver Cell//Cell Carcinoma, Liver//Cell Carcinomas, Liver//Liver Cell Carcinomas//Hepatocellular Carcinoma//Hepatoma//Hepatomas



Expression Detail

GEO ID:GSE85679
Description:Serum miRNA in liver disease
Experimental Design:Surgery treatment
Case Disease Type:Hepatocellular Carcinoma
Case Disease SubType:NA
Case Sample:Hepatocellular Carcinoma Post surgery 4
Control Sample:Pre surgery
Number of Case:98
Number of Control:98
Number of Samples:196





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AMER1
chrX
64185117
64205708
-
APH1A
chr1
150265399
150269580
-
APP
chr21
25880550
26171128
-
BCL11A
chr2
60450520
60554467
-
BIRC5
chr17
78214186
78225636
+
C1QTNF6
chr22
37180166
37199385
-
CALU
chr7
128739292
128773400
+
CREG1
chr1
167529117
167553805
-
FASN
chr17
82078338
82098294
-
FBXO10
chr9
37510892
37576380
-
GATAD2B
chr1
153789030
153923360
-
KLHDC3
chr6
43014103
43021298
+
KLHL28
chr14
44924319
45042322
-
KMT5C
chr19
55339853
55348121
+
NASP
chr1
45583846
45618904
+
NMI
chr2
151270470
151289894
-
PER3
chr1
7784320
7845177
+
RNF138
chr18
32091874
32131561
+
SH3GLB1
chr1
86704570
86748184
+
SP1
chr12
53380176
53416446
+
CTSS
chr1
150730188
150765792
-
KDM5B
chr1
202724495
202808487
-
NREP
chr5
111662621
111997464
-
RINT1
chr7
105532169
105567677
+
RPL13
chr16
89560657
89566828
+
ZNF318
chr6
43307134
43369647
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000018
chr1
15860731
15863309
+
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007036.3
chr7
30157531
30159534
+
AC012146.1
chr17
5111468
5115004
+
AC018521.1
chr17
47945424
47981736
+
AL137129.1
chr14
61734138
61776260
+
AL355488.1
chr1
110370154
110373003
+
AL391244.1
chr1
1420245
1422691
+
AP001432.1
chr21
37221419
37237744
+
H19
chr11
1995176
2001470
-
MIR4458HG
chr5
8450701
8486930
+
MIR497HG
chr17
7015818
7019659
-
MIRLET7BHG
chr22
46053869
46113928
+
NEAT1
chr11
65422774
65445540
+
OIP5-AS1
chr15
41283990
41309737
+
TUG1
chr22
30969245
30979395
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE85679
Sample Source:Blood
Source Fraction:Serum
Platform:GPL18941
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:2524
Sample treatment protocol:NA
RNA Extract protocol:RNA samples were extracted from serum using 3D-Gene RNA extraction reagent from liquid sampld (Toray Industries Inc., Tokyo, Japan).
RNA library preparation protocol:Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray Industries Inc., Tokyo, Japan).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA