Entry Detail


General Information

Database ID:exR0350071
RNA Name:hsa-miR-33b-5p
RNA Type:miRNA
Chromosome:chr17
Starnd:-
Coordinate:
Start Site(bp):17813897End Site(bp):17813916
External Links:hsa-miR-33b-5p



Disease Information

Disease Name:Hepatocellular Carcinoma
Disease Category:Cancers
MeSH ID:D006528
Type:Neoplasms/Digestive System Neoplasms
Alias:Carcinoma, Hepatocellular//Carcinomas, Hepatocellular//Hepatocellular Carcinomas//Liver Cell Carcinoma, Adult//Liver Cancer, Adult//Adult Liver Cancer//Adult Liver Cancers//Cancer, Adult Liver//Cancers, Adult Liver//Liver Cancers, Adult//Liver Cell Carcinoma//Carcinoma, Liver Cell//Carcinomas, Liver Cell//Cell Carcinoma, Liver//Cell Carcinomas, Liver//Liver Cell Carcinomas//Hepatocellular Carcinoma//Hepatoma//Hepatomas



Expression Detail

GEO ID:GSE85679
Description:Serum miRNA in liver disease
Experimental Design:Surgery treatment
Case Disease Type:Hepatocellular Carcinoma
Case Disease SubType:NA
Case Sample:Hepatocellular Carcinoma Post surgery 4
Control Sample:Pre surgery
Number of Case:98
Number of Control:98
Number of Samples:196





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ADCY9
chr16
3953387
4116442
-
AFF4
chr5
132875395
132963634
-
BTBD7
chr14
93237550
93333092
-
CERK
chr22
46684410
46738252
-
CROT
chr7
87345681
87399795
+
DDX5
chr17
64498254
64508199
-
E2F3
chr6
20401879
20493714
+
ECHDC1
chr6
127288712
127343609
-
EIF5A2
chr3
170888418
170908644
-
IGF1R
chr15
98648539
98964530
+
IRS2
chr13
109752695
109786583
-
MAPK1IP1L
chr14
55051647
55070194
+
MAPK6
chr15
51952106
52067375
+
MTHFD2
chr2
74198610
74217565
+
MYO19
chr17
36495633
36543435
-
NAA15
chr4
139301505
139420033
+
NFAT5
chr16
69565094
69704666
+
PIM1
chr6
37170152
37175428
+
RBM33
chr7
155644451
155781485
+
RCAN1
chr21
34513142
34615113
-
ROBO1
chr3
78597239
79767998
-
SLC39A8
chr4
102251041
102431258
-
SULF2
chr20
47656348
47786616
-
TNPO1
chr5
72816312
72916733
+
TPM1
chr15
63042632
63071915
+
UBN2
chr7
139230356
139308236
+
WDFY3
chr4
84669610
84966391
-
XRN1
chr3
142306607
142448062
-
ZFYVE16
chr5
80408013
80483379
+
ZNF148
chr3
125225561
125375354
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000540
chr14
55799534
55821940
+
hsa_circ_0001349
chr3
152132729
152150709
+
hsa_circ_0000642
chr15
80390757
80415142
+
hsa_circ_0000643
chr15
80412669
80415142
+
hsa_circ_0000284
chr11
33307958
33309057
+
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC023509.1
chr12
53441741
53467528
+
DANCR
chr4
52712404
52720351
+
FGD5-AS1
chr3
14920347
14948424
-
MCF2L-AS1
chr13
112967484
112968824
-
NEAT1
chr11
65422774
65445540
+
Display:



Experiment Detail

GEO ID:GSE85679
Sample Source:Blood
Source Fraction:Serum
Platform:GPL18941
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:2524
Sample treatment protocol:NA
RNA Extract protocol:RNA samples were extracted from serum using 3D-Gene RNA extraction reagent from liquid sampld (Toray Industries Inc., Tokyo, Japan).
RNA library preparation protocol:Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray Industries Inc., Tokyo, Japan).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA