Entry Detail


General Information

Database ID:exR0350126
RNA Name:hsa-miR-3654
RNA Type:miRNA
Chromosome:chr7
Starnd:-
Coordinate:
Start Site(bp):133034860End Site(bp):133034878
External Links:hsa-miR-3654



Disease Information

Disease Name:Hepatocellular Carcinoma
Disease Category:Cancers
MeSH ID:D006528
Type:Neoplasms/Digestive System Neoplasms
Alias:Carcinoma, Hepatocellular//Carcinomas, Hepatocellular//Hepatocellular Carcinomas//Liver Cell Carcinoma, Adult//Liver Cancer, Adult//Adult Liver Cancer//Adult Liver Cancers//Cancer, Adult Liver//Cancers, Adult Liver//Liver Cancers, Adult//Liver Cell Carcinoma//Carcinoma, Liver Cell//Carcinomas, Liver Cell//Cell Carcinoma, Liver//Cell Carcinomas, Liver//Liver Cell Carcinomas//Hepatocellular Carcinoma//Hepatoma//Hepatomas



Expression Detail

GEO ID:GSE85679
Description:Serum miRNA in liver disease
Experimental Design:Surgery treatment
Case Disease Type:Hepatocellular Carcinoma
Case Disease SubType:NA
Case Sample:Hepatocellular Carcinoma Post surgery 4
Control Sample:Pre surgery
Number of Case:98
Number of Control:98
Number of Samples:196





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
TUBB
chr6
30720352
30725426
+
DEPDC1B
chr5
60596912
60700190
-
ERI2
chr16
20780193
20900349
-
CCT7
chr2
73233420
73253021
+
APLP2
chr11
130068147
130144811
+
MRPL11
chr11
66435075
66466738
-
HSPA8
chr11
123057489
123063230
-
GGH
chr8
63015079
63038806
-
MDK
chr11
46380756
46383837
+
EGR1
chr5
138465479
138469303
+
MKRN1
chr7
140453033
140479536
-
RPS14
chr5
150442635
150449739
-
DDTL
chr22
23966888
23972556
+
DCAF8
chr1
160215715
160262549
-
RNPS1
chr16
2253116
2268397
-
DCPS
chr11
126304060
126350005
+
MPRIP
chr17
17042545
17217679
+
RPL12
chr9
127447674
127451406
-
RPL13A
chr19
49487554
49492308
+
RPS12
chr6
132814569
132817564
+
HLA-DRA
chr6
32439878
32445046
+
STMN1
chr1
25884181
25906991
-
RPS3
chr11
75399515
75422280
+
RPL3
chr22
39312882
39320389
-
FTH1
chr11
61959718
61967634
-
TSPAN18
chr11
44726465
44932423
+
HLA-DRB5
chr6
32517353
32530287
-
NOLC1
chr10
102152176
102163871
+
HMGA1
chr6
34236873
34246231
+
CCDC85C
chr14
99500190
99604207
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AD000090.1
chr19
35557956
35581954
+
BCDIN3D-AS1
chr12
49827913
49841143
+
LINC00996
chr7
150433654
150448140
+
Display:



Experiment Detail

GEO ID:GSE85679
Sample Source:Blood
Source Fraction:Serum
Platform:GPL18941
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:2524
Sample treatment protocol:NA
RNA Extract protocol:RNA samples were extracted from serum using 3D-Gene RNA extraction reagent from liquid sampld (Toray Industries Inc., Tokyo, Japan).
RNA library preparation protocol:Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray Industries Inc., Tokyo, Japan).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA