Entry Detail


General Information

Database ID:exR0350922
RNA Name:hsa-miR-513a-5p
RNA Type:miRNA
Chromosome:chrX
Starnd:-
Coordinate:
Start Site(bp):147213538End Site(bp):147213555
External Links:hsa-miR-513a-5p



Disease Information

Disease Name:Hepatocellular Carcinoma
Disease Category:Cancers
MeSH ID:D006528
Type:Neoplasms/Digestive System Neoplasms
Alias:Carcinoma, Hepatocellular//Carcinomas, Hepatocellular//Hepatocellular Carcinomas//Liver Cell Carcinoma, Adult//Liver Cancer, Adult//Adult Liver Cancer//Adult Liver Cancers//Cancer, Adult Liver//Cancers, Adult Liver//Liver Cancers, Adult//Liver Cell Carcinoma//Carcinoma, Liver Cell//Carcinomas, Liver Cell//Cell Carcinoma, Liver//Cell Carcinomas, Liver//Liver Cell Carcinomas//Hepatocellular Carcinoma//Hepatoma//Hepatomas



Expression Detail

GEO ID:GSE85679
Description:Serum miRNA in liver disease
Experimental Design:Surgery treatment
Case Disease Type:Hepatocellular Carcinoma
Case Disease SubType:NA
Case Sample:Hepatocellular Carcinoma Post surgery 4
Control Sample:Pre surgery
Number of Case:98
Number of Control:98
Number of Samples:196





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AEN
chr15
88621337
88632281
+
CD276
chr15
73683966
73714514
+
FAM168B
chr2
131047876
131093460
-
GIPC1
chr19
14477760
14496149
-
IGF2BP3
chr7
23310209
23470491
-
ILF3
chr19
10654261
10692417
+
JRK
chr8
142657460
142681968
-
KCTD21
chr11
78171249
78188626
-
KIAA0232
chr4
6781375
6884170
+
MET
chr7
116672196
116798386
+
MTCL1
chr18
8705661
8832778
+
NRBP1
chr2
27427790
27442259
+
PA2G4
chr12
56104537
56113910
+
PAK1
chr11
77321707
77474635
-
PLK2
chr5
58453982
58460139
-
PPP1CC
chr12
110719680
110742939
-
PRLR
chr5
35048756
35230487
-
RHOU
chr1
228735479
228746664
+
SNX27
chr1
151612006
151699091
+
SOX11
chr2
5692384
5701385
+
SS18
chr18
26016253
26091217
-
STRBP
chr9
123109500
123268586
-
TMX4
chr20
7977346
8019805
-
TXN2
chr22
36467046
36481640
-
WASL
chr7
123681943
123749003
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000894
chr19
12825634
12826553
-
hsa_circ_0000540
chr14
55799534
55821940
+
hsa_circ_0001005
chr2
53921020
53978078
-
hsa_circ_0001168
chr20
47691321
47707559
+
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC009133.5
chr16
29808679
29812227
+
AC023509.1
chr12
53441741
53467528
+
AC095055.1
chr4
151139991
151141103
+
AC239868.1
chr1
149861271
149862504
+
CYTOR
chr2
87454781
87636740
+
KCNQ1OT1
chr11
2608328
2699994
-
LINC01578
chr15
92819540
92899701
+
MIR4435-2HG
chr2
111006015
111523376
-
MIR663AHG
chr20
26167817
26251546
-
NEAT1
chr11
65422774
65445540
+
OIP5-AS1
chr15
41283990
41309737
+
SNHG16
chr17
76557764
76565348
+
SNHG20
chr17
77086716
77099902
+
Display:



Experiment Detail

GEO ID:GSE85679
Sample Source:Blood
Source Fraction:Serum
Platform:GPL18941
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:2524
Sample treatment protocol:NA
RNA Extract protocol:RNA samples were extracted from serum using 3D-Gene RNA extraction reagent from liquid sampld (Toray Industries Inc., Tokyo, Japan).
RNA library preparation protocol:Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray Industries Inc., Tokyo, Japan).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA