Entry Detail


General Information

Database ID:exR0350935
RNA Name:hsa-miR-516b-5p
RNA Type:miRNA
Chromosome:chr19
Starnd:+
Coordinate:
Start Site(bp):53736860End Site(bp):53736881
External Links:hsa-miR-516b-5p



Disease Information

Disease Name:Hepatocellular Carcinoma
Disease Category:Cancers
MeSH ID:D006528
Type:Neoplasms/Digestive System Neoplasms
Alias:Carcinoma, Hepatocellular//Carcinomas, Hepatocellular//Hepatocellular Carcinomas//Liver Cell Carcinoma, Adult//Liver Cancer, Adult//Adult Liver Cancer//Adult Liver Cancers//Cancer, Adult Liver//Cancers, Adult Liver//Liver Cancers, Adult//Liver Cell Carcinoma//Carcinoma, Liver Cell//Carcinomas, Liver Cell//Cell Carcinoma, Liver//Cell Carcinomas, Liver//Liver Cell Carcinomas//Hepatocellular Carcinoma//Hepatoma//Hepatomas



Expression Detail

GEO ID:GSE85679
Description:Serum miRNA in liver disease
Experimental Design:Surgery treatment
Case Disease Type:Hepatocellular Carcinoma
Case Disease SubType:NA
Case Sample:Hepatocellular Carcinoma Post surgery 4
Control Sample:Pre surgery
Number of Case:98
Number of Control:98
Number of Samples:196





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
BCL2L11
chr2
111119378
111168445
+
CHKB-CPT1B
chr22
50568869
50582965
-
CPT1B
chr22
50568861
50578465
-
DNAJC9
chr10
73183362
73247255
-
FAM13B
chr5
137937960
138051961
-
FNBP4
chr11
47716494
47767443
-
FOSL2
chr2
28392448
28417317
+
FSD1
chr19
4304598
4323843
+
GOLGA1
chr9
124878275
124948492
-
HIF1AN
chr10
100529072
100559998
+
MAK16
chr8
33485182
33501262
+
NEMP1
chr12
57055643
57088063
-
NID1
chr1
235975830
236065109
-
PIGS
chr17
28553383
28571794
-
QSER1
chr11
32892820
32993316
+
RABGAP1
chr9
122940833
123104866
+
S100A16
chr1
153606886
153613145
-
SGPP1
chr14
63684216
63728065
-
STAT3
chr17
42313324
42388568
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000698
chr16
47531309
47549512
+
hsa_circ_0001727
chr7
99621041
99621930
+
hsa_circ_0001495
chr5
68470703
68471364
+
hsa_circ_0000825
chr18
8718421
8720494
+
hsa_circ_0001387
chr4
1902352
1936989
+
hsa_circ_0000038
chr1
28800065
28802803
+
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC016876.2
chr17
7581964
7584086
-
AC079781.5
chr7
97851688
97972985
-
AL157392.3
chr10
13631143
13668445
+
COL4A2-AS2
chr13
110456396
110463287
-
LINC00324
chr17
8220642
8224043
-
LINC01184
chr5
127939152
128083172
-
MIR194-2HG
chr11
64889560
64893449
-
NEAT1
chr11
65422774
65445540
+
PCBP1-AS1
chr2
69962263
70103220
-
TBC1D3P1-DHX40P1
chr17
59962363
60018975
-
TUG1
chr22
30969245
30979395
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE85679
Sample Source:Blood
Source Fraction:Serum
Platform:GPL18941
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:2524
Sample treatment protocol:NA
RNA Extract protocol:RNA samples were extracted from serum using 3D-Gene RNA extraction reagent from liquid sampld (Toray Industries Inc., Tokyo, Japan).
RNA library preparation protocol:Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray Industries Inc., Tokyo, Japan).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA