Entry Detail


General Information

Database ID:exR0350976
RNA Name:hsa-miR-520d-3p
RNA Type:miRNA
Chromosome:chr19
Starnd:+
Coordinate:
Start Site(bp):53720149End Site(bp):53720170
External Links:hsa-miR-520d-3p



Disease Information

Disease Name:Hepatocellular Carcinoma
Disease Category:Cancers
MeSH ID:D006528
Type:Neoplasms/Digestive System Neoplasms
Alias:Carcinoma, Hepatocellular//Carcinomas, Hepatocellular//Hepatocellular Carcinomas//Liver Cell Carcinoma, Adult//Liver Cancer, Adult//Adult Liver Cancer//Adult Liver Cancers//Cancer, Adult Liver//Cancers, Adult Liver//Liver Cancers, Adult//Liver Cell Carcinoma//Carcinoma, Liver Cell//Carcinomas, Liver Cell//Cell Carcinoma, Liver//Cell Carcinomas, Liver//Liver Cell Carcinomas//Hepatocellular Carcinoma//Hepatoma//Hepatomas



Expression Detail

GEO ID:GSE85679
Description:Serum miRNA in liver disease
Experimental Design:Surgery treatment
Case Disease Type:Hepatocellular Carcinoma
Case Disease SubType:NA
Case Sample:Hepatocellular Carcinoma Post surgery 4
Control Sample:Pre surgery
Number of Case:98
Number of Control:98
Number of Samples:196





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
CAMK2N1
chr1
20482391
20486210
-
KIAA1522
chr1
32741830
32774970
+
RGMA
chr15
93035273
93089204
-
APP
chr21
25880550
26171128
-
ATP6V1B2
chr8
20197381
20226819
+
CUL1
chr7
148697914
148801110
+
WASF3
chr13
26557683
26688948
+
ATP6V1C1
chr8
103021063
103073051
+
FYCO1
chr3
45917899
45995824
-
DIP2A
chr21
46458891
46570015
+
LONP2
chr16
48244300
48363122
+
ARL4A
chr7
12686856
12690958
+
ZSCAN26
chr6
28267010
28278224
+
PLAGL2
chr20
32192504
32207743
-
MLLT1
chr19
6210381
6279975
-
SRRT
chr7
100875103
100888664
+
AMPD2
chr1
109616104
109632053
+
GLCE
chr15
69160584
69272217
+
ZFAND4
chr10
45615500
45672780
-
MTF1
chr1
37809574
37859592
-
FAM102A
chr9
127940582
127980989
-
CCDC93
chr2
117915478
118014133
-
VLDLR
chr9
2621787
2660056
+
ATXN1
chr6
16299112
16761491
-
PHC3
chr3
170086732
170181749
-
CELF2
chr10
10798397
11336675
+
SCAMP2
chr15
74843730
74873365
-
SEMA3C
chr7
80742538
80922359
-
CHD9
chr16
53055033
53329150
+
MNT
chr17
2384073
2401104
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000943
chr19
47421744
47440665
+
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AL049840.4
chr14
103694516
103695050
-
ARHGAP27P1-BPTFP1-KPNA2P3
chr17
64749663
64781707
-
FGD5-AS1
chr3
14920347
14948424
-
MIR17HG
chr13
91347820
91354579
+
NEAT1
chr11
65422774
65445540
+
NORAD
chr20
36045618
36051018
-
SNHG16
chr17
76557764
76565348
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE85679
Sample Source:Blood
Source Fraction:Serum
Platform:GPL18941
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:2524
Sample treatment protocol:NA
RNA Extract protocol:RNA samples were extracted from serum using 3D-Gene RNA extraction reagent from liquid sampld (Toray Industries Inc., Tokyo, Japan).
RNA library preparation protocol:Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray Industries Inc., Tokyo, Japan).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA