Entry Detail


General Information

Database ID:exR0351193
RNA Name:hsa-miR-588
RNA Type:miRNA
Chromosome:chr6
Starnd:+
Coordinate:
Start Site(bp):126484646End Site(bp):126484666
External Links:hsa-miR-588



Disease Information

Disease Name:Hepatocellular Carcinoma
Disease Category:Cancers
MeSH ID:D006528
Type:Neoplasms/Digestive System Neoplasms
Alias:Carcinoma, Hepatocellular//Carcinomas, Hepatocellular//Hepatocellular Carcinomas//Liver Cell Carcinoma, Adult//Liver Cancer, Adult//Adult Liver Cancer//Adult Liver Cancers//Cancer, Adult Liver//Cancers, Adult Liver//Liver Cancers, Adult//Liver Cell Carcinoma//Carcinoma, Liver Cell//Carcinomas, Liver Cell//Cell Carcinoma, Liver//Cell Carcinomas, Liver//Liver Cell Carcinomas//Hepatocellular Carcinoma//Hepatoma//Hepatomas



Expression Detail

GEO ID:GSE85679
Description:Serum miRNA in liver disease
Experimental Design:Surgery treatment
Case Disease Type:Hepatocellular Carcinoma
Case Disease SubType:NA
Case Sample:Hepatocellular Carcinoma Post surgery 4
Control Sample:Pre surgery
Number of Case:98
Number of Control:98
Number of Samples:196





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ADGRE5
chr19
14380501
14408725
+
ARHGDIA
chr17
81867721
81871378
-
EDEM3
chr1
184690237
184754907
-
EIF1AD
chr11
65996545
66002176
-
FURIN
chr15
90868588
90883458
+
GLIS2
chr16
4314761
4339597
+
NID1
chr1
235975830
236065109
-
NIP7
chr16
69337996
69343106
+
NT5DC3
chr12
103770453
103841234
-
STK40
chr1
36339624
36385896
-
TSPAN14
chr10
80454166
80533124
+
TUB
chr11
8019244
8106112
+
ZBTB39
chr12
56998836
57006546
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0001025
chr2
69565029
69565697
-
hsa_circ_0000384
chr12
27867712
27877119
+
hsa_circ_0001247
chr22
46125304
46136418
+
hsa_circ_0000284
chr11
33307958
33309057
+
hsa_circ_0000126
chr1
150997086
150999803
+
hsa_circ_0000744
chr17
15968183
15971435
-
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007161.3
chr7
7640752
8004053
+
AL022311.1
chr22
37876148
37895563
+
AL359924.1
chr1
237862175
237928321
+
H19
chr11
1995176
2001470
-
MIR497HG
chr17
7015818
7019659
-
NEAT1
chr11
65422774
65445540
+
PINK1-AS
chr1
20642657
20652193
-
SNHG8
chr4
118278709
118285316
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE85679
Sample Source:Blood
Source Fraction:Serum
Platform:GPL18941
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:2524
Sample treatment protocol:NA
RNA Extract protocol:RNA samples were extracted from serum using 3D-Gene RNA extraction reagent from liquid sampld (Toray Industries Inc., Tokyo, Japan).
RNA library preparation protocol:Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray Industries Inc., Tokyo, Japan).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA