exRNAdisease

Entry Detail

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General Information

Database ID: exR0355169 RNA Name: DANCR RNA Type: lncRNA Chromosome: chr4 Starnd: + Coordinate: Start Site(bp): 52712404 End Site(bp): 52720351 External Links: ENSG00000226950

Disease Information

Disease Name: Rheumatoid Arthritis Disease Category: Musculoskeletal Diseases MeSH ID: D001172 Type: Diseases Category/Musculoskeletal Diseases Alias: Arthritis, Rheumatoid//Rheumatoid Arthritis

Expression Detail

GEO ID: GSE94519 Description: Long noncoding RNAs expression profile in patients with rheumatoid arthritis Experimental Design: Disease vs Control Case Disease Type: Rheumatoid Arthritis Case Disease SubType: NA Case Sample: Rheumatoid Arthritis Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCF1 chr6 30571393 30597179 + ABHD14A-ACY1 chr3 51974706 51989183 + AC009690.1 chr15 72284727 72375981 - ACOT7 chr1 6264269 6394391 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACVR1B chr12 51951699 51997078 + ACY1 chr3 51983340 51989197 + AKT2 chr19 40230317 40285536 - AL358113.1 chr9 69035747 69255187 + ALDOA chr16 30064164 30070457 + AC139530.2 chr17 81703371 81720539 + AKIP1 chr11 8911139 8920084 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-33a-5p chr22 41900949 41900969 + hsa-miR-216a-5p chr2 55989020 55989041 - hsa-miR-125b-5p chr21 16590253 16590274 + hsa-miR-135a-5p chr12 97563834 97563856 + hsa-miR-125a-5p chr19 51693268 51693291 + hsa-miR-135b-5p chr1 205448361 205448383 - hsa-miR-496 chr14 101060628 101060649 + hsa-miR-33b-5p chr17 17813897 17813916 - hsa-miR-656-3p chr14 101066766 101066786 + hsa-miR-758-3p chr14 101026071 101026092 + hsa-miR-214-5p chr1 172138857 172138878 - hsa-miR-874-3p chr5 137647582 137647603 - hsa-miR-1301-3p chr2 25328651 25328674 - hsa-miR-3180-3p chr16 16309936 16309957 + hsa-miR-3196 chr20 63238788 63238805 + hsa-miR-3200-3p chr22 30731610 30731631 + hsa-miR-4319 chr18 44970140 44970156 - hsa-miR-3180 chr16 15154949 15154967 - hsa-miR-4436a chr2 88812425 88812445 + hsa-miR-1343-3p chr11 34941888 34941909 + hsa-miR-5047 chr17 64501230 64501250 - hsa-miR-5000-3p chr2 75090873 75090894 + hsa-miR-506-5p chrX 147230788 147230809 - hsa-miR-1277-5p chrX 118386401 118386424 + hsa-miR-1306-5p chr22 20086072 20086093 + hsa-miR-6783-3p chr17 44934618 44934639 - hsa-miR-6816-5p chr22 20114726 20114746 - circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE94519 Sample Source: Blood Source Fraction: Serum Platform: GPL20115 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1224 Sample treatment protocol: All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection. RNA Extract protocol: RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN). RNA library preparation protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA