exRNAdisease

Entry Detail

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General Information

Database ID: exR0355302 RNA Name: GAS5 RNA Type: lncRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 173858559 End Site(bp): 173868882 External Links: ENSG00000234741

Disease Information

Disease Name: Rheumatoid Arthritis Disease Category: Musculoskeletal Diseases MeSH ID: D001172 Type: Diseases Category/Musculoskeletal Diseases Alias: Arthritis, Rheumatoid//Rheumatoid Arthritis

Expression Detail

GEO ID: GSE94519 Description: Long noncoding RNAs expression profile in patients with rheumatoid arthritis Experimental Design: Disease vs Control Case Disease Type: Rheumatoid Arthritis Case Disease SubType: NA Case Sample: Rheumatoid Arthritis Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCC1 chr16 15949577 16143074 + AC104109.3 chr5 134167170 134226071 - ACSS2 chr20 34872146 34927962 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR3 chr2 113890063 113962596 + AGFG1 chr2 227472152 227561214 + AL133352.1 chr10 100505628 100529881 - AC013394.1 chr15 92883413 92949230 + AC026954.2 chr17 7312661 7319174 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4766-5p chr22 40813927 40813947 - hsa-miR-361-5p chrX 85903681 85903702 - hsa-miR-4640-3p chr6 30890949 30890970 + hsa-miR-4676-3p chr10 72721072 72721093 + hsa-miR-320b chr1 224257049 224257070 - hsa-miR-532-5p chrX 50003167 50003188 + hsa-miR-515-5p chr19 53685022 53685045 + hsa-miR-346 chr10 86264747 86264769 - hsa-miR-5579-3p chr11 79422169 79422190 - hsa-miR-6807-3p chr19 58550354 58550376 + hsa-miR-374b-5p chrX 74218587 74218608 - hsa-miR-196a-5p chr17 48632532 48632553 - hsa-miR-579-3p chr5 32394392 32394414 - hsa-miR-374a-5p chrX 74287325 74287346 - hsa-miR-320a-3p chr8 22244975 22244996 - hsa-miR-3127-5p chr2 96798288 96798310 + hsa-miR-345-5p chr14 100307876 100307897 + hsa-miR-223-3p chrX 66018937 66018958 + hsa-miR-525-5p chr19 53697547 53697567 + hsa-miR-524-5p chr19 53711017 53711038 + hsa-miR-548o-3p chr20 38516607 38516628 + hsa-miR-744-5p chr17 12081909 12081930 + hsa-miR-144-5p chr17 28861583 28861604 - hsa-miR-1908-5p chr11 61815209 61815229 - hsa-miR-23a-3p chr19 13836595 13836615 - hsa-miR-509-3p chrX 147258775 147258796 - hsa-miR-320d chr13 40727828 40727846 - hsa-miR-3622b-5p chr8 27701726 27701745 - hsa-miR-1251-5p chr12 97491913 97491933 + hsa-miR-892c-3p chrX 145992760 145992781 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC009446.1 chr8 71675300 71702786 + AC016876.2 chr17 7581964 7584086 - AC027644.3 chr7 66739829 66740385 - AC055860.1 chr11 18000542 18022931 - AC138207.2 chr17 31090787 31095450 - AL117378.1 chr6 131901963 131920565 + Display:

Experiment Detail

GEO ID: GSE94519 Sample Source: Blood Source Fraction: Serum Platform: GPL20115 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1224 Sample treatment protocol: All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection. RNA Extract protocol: RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN). RNA library preparation protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA