Entry Detail



General Information

Database ID:exR0355406
RNA Name:JPX
RNA Type:lncRNA
Chromosome:chrX
Starnd:+
Coordinate:
Start Site(bp):73944182End Site(bp):74070408
External Links:ENSG00000225470



Disease Information

Disease Name:Rheumatoid Arthritis
Disease Category:Musculoskeletal Diseases
MeSH ID:D001172
Type:Diseases Category/Musculoskeletal Diseases
Alias:Arthritis, Rheumatoid//Rheumatoid Arthritis



Expression Detail

GEO ID:GSE94519
Description:Long noncoding RNAs expression profile in patients with rheumatoid arthritis
Experimental Design:Disease vs Control
Case Disease Type:Rheumatoid Arthritis
Case Disease SubType:NA
Case Sample:Rheumatoid Arthritis
Control Sample:Healthy
Number of Case:3
Number of Control:3
Number of Samples:6





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC092329.3
chr19
23222755
23274221
-
AC138811.2
chr16
18788063
18801519
-
ADGRL2
chr1
81306160
81992436
+
AIFM1
chrX
130129362
130165887
-
AL590764.2
chrX
71103987
71111575
-
ACOT9
chrX
23701055
23766475
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-145-5p
chr5
149430661
149430683
+
hsa-miR-944
chr3
189829975
189829996
+
hsa-miR-1301-3p
chr2
25328651
25328674
-
hsa-miR-5047
chr17
64501230
64501250
-
hsa-miR-5195-3p
chr14
106850910
106850930
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC009446.1
chr8
71675300
71702786
+
AC064802.1
chr8
114282067
114295839
+
AC092329.1
chr19
23257255
23274232
-
AC092329.4
chr19
23259906
23274251
-
Display:



Experiment Detail

GEO ID:GSE94519
Sample Source:Blood
Source Fraction:Serum
Platform:GPL20115
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1224
Sample treatment protocol:All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection.
RNA Extract protocol:RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN).
RNA library preparation protocol:Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA